View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_high_67 (Length: 217)

Name: NF17615_high_67
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_high_67
NF17615_high_67
[»] chr3 (9 HSPs)
chr3 (20-198)||(9377957-9378135)
chr3 (76-194)||(9353776-9353894)
chr3 (103-195)||(9344693-9344785)
chr3 (120-181)||(9417365-9417426)
chr3 (120-181)||(9398602-9398663)
chr3 (120-187)||(9441026-9441093)
chr3 (137-187)||(9408176-9408226)
chr3 (124-179)||(9449162-9449217)
chr3 (122-179)||(41986548-41986605)
[»] scaffold0038 (2 HSPs)
scaffold0038 (98-195)||(20458-20555)
scaffold0038 (103-195)||(20321-20413)
[»] chr6 (8 HSPs)
chr6 (98-195)||(28177051-28177148)
chr6 (98-195)||(28177193-28177290)
chr6 (98-195)||(28219960-28220057)
chr6 (73-194)||(9158636-9158757)
chr6 (73-194)||(9171671-9171792)
chr6 (103-179)||(28132954-28133030)
chr6 (103-195)||(28133091-28133183)
chr6 (103-195)||(28219823-28219915)
[»] chr1 (1 HSPs)
chr1 (120-195)||(4440664-4440739)
[»] scaffold0455 (1 HSPs)
scaffold0455 (103-179)||(10860-10936)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 9378135 - 9377957
Alignment:
Q  20 atcgtttgccatttattatttactagcgttctttttgcaccttcacagttacttccatggcgtcggtggactggactgagctgccaagggatattctctt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9378135 atcgtttgccatttattatttactagcgttctttttgcaccttcacagttacttccatggcgtcggtggactggactgagcttccaagggatattctctt 9378036  T
Q  120 tctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggcactcttctccc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9378035 tctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggcactcttctccc 9377957  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 9353894 - 9353776
Alignment:
Q  76 atggcgtcggtggactggactgagctgccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggttt 175  Q
    |||||||| ||||||||| ||||||| |||| ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  9353894 atggcgtcagtggactggtctgagcttccaaaggatattatctttctgatatcacaacgccttgacgtagaacttgatctcattcgttttcgatcagttt 9353795  T
Q  176 gttcaacttggcactcttc 194  Q
    |||||||||||| ||||||    
T  9353794 gttcaacttggcgctcttc 9353776  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 9344785 - 9344693
Alignment:
Q  103 ccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggcactcttct 195  Q
    |||| |||| |||||  ||| ||||| ||||||||||||  |||||||||||||||||| |||||||| |||||||| | |||||||||||||    
T  9344785 ccaaaggatcttctcaatcttatatcgcaacgcctcgacaatgaacttgatctcattcgctttcgatctgtttgttccaattggcactcttct 9344693  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 9417426 - 9417365
Alignment:
Q  120 tctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaa 181  Q
    |||||||||||||||  | |||| ||||||||||||||||| ||||||||||||||||||||    
T  9417426 tctgatatcacaacgaattgacgatgaacttgatctcattcattttcgatcggtttgttcaa 9417365  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 9398663 - 9398602
Alignment:
Q  120 tctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaa 181  Q
    ||||||||| |||||  | |||| ||||||||||||||||| ||||||||||||||||||||    
T  9398663 tctgatatcccaacgaattgacgatgaacttgatctcattcattttcgatcggtttgttcaa 9398602  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 9441026 - 9441093
Alignment:
Q  120 tctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggc 187  Q
    ||||||||| |||||  |||||| |||||| |||||||||||||||||||| || |||||||| ||||    
T  9441026 tctgatatcgcaacgaatcgacgatgaactcgatctcattcgttttcgatctgtatgttcaacgtggc 9441093  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 9408226 - 9408176
Alignment:
Q  137 tcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggc 187  Q
    |||||| |||||| |||||||||| ||||||||||||||||||||| ||||    
T  9408226 tcgacgatgaactcgatctcattcattttcgatcggtttgttcaacgtggc 9408176  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 9449217 - 9449162
Alignment:
Q  124 atatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttc 179  Q
    ||||||||| | ||||||  |||||| |||||||||||||||||||| ||||||||    
T  9449217 atatcacaaaggctcgacaatgaactcgatctcattcgttttcgatcagtttgttc 9449162  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 41986605 - 41986548
Alignment:
Q  122 tgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttc 179  Q
    |||||||||||||  |||||  ||| ||||||||||||||||| ||||| ||||||||    
T  41986605 tgatatcacaacgattcgacaatgatcttgatctcattcgtttccgatcagtttgttc 41986548  T

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Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 20555 - 20458
Alignment:
Q  98 agctgccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggcactcttct 195  Q
    |||| |||| |||| |||||  ||||||||||||||| ||||||  |||||| |||||||||||||||||||| ||| |||  | ||| |||||||||    
T  20555 agcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttcaattgacactcttct 20458  T

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Target: scaffold0038; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 20321 - 20413
Alignment:
Q  103 ccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggcactcttct 195  Q
    |||| |||| |||||  ||||||||||||||  ||||||  |||| | |||||||||| ||||||||| |||| ||| | |||||||||||||    
T  20321 ccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattccaattggcactcttct 20413  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 28177051 - 28177148
Alignment:
Q  98 agctgccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggcactcttct 195  Q
    |||| |||| |||| |||||  ||||||||||||||  ||||||  |||| | ||||||||| |||||||||| |||||||| | |||||||||||||    
T  28177051 agcttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcatttgttttcgatctgtttgttccaattggcactcttct 28177148  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 28177290 - 28177193
Alignment:
Q  98 agctgccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggcactcttct 195  Q
    |||| |||| |||| |||||  ||||||||||||||| ||||||  |||||| |||||||||||||||||||  ||| |||| | ||| |||||||||    
T  28177290 agcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatatgttcgttccaattgacactcttct 28177193  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 28220057 - 28219960
Alignment:
Q  98 agctgccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggcactcttct 195  Q
    |||| |||| |||| |||||  ||||||||||||||| ||||||  |||||| |||||||||||||||||||| ||| |||  | ||| |||||||||    
T  28220057 agcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttcaattgacactcttct 28219960  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 9158636 - 9158757
Alignment:
Q  73 tccatggcgtcggtggactggactgagctgccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcgg 172  Q
    ||||||||  |||| ||||||||| | || |||| |||| |||||  |||||||||||||||  || | |  ||| ||||||||||||| |||| ||| |    
T  9158636 tccatggcagcggtcgactggactaaacttccaaaggatcttctcaatctgatatcacaacgaatcaatgacgaagttgatctcattcgctttcaatcag 9158735  T
Q  173 tttgttcaacttggcactcttc 194  Q
    |||||||||| |||| ||||||    
T  9158736 tttgttcaacatggcgctcttc 9158757  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 9171792 - 9171671
Alignment:
Q  73 tccatggcgtcggtggactggactgagctgccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcgg 172  Q
    ||||||||  |||| ||||||||| | || |||| |||| |||||  |||||||||||||||  || | | |||| | ||||||||||| |||| ||| |    
T  9171792 tccatggcagcggtcgactggactaaacttccaaaggatcttctcaatctgatatcacaacgaatctatgatgaagtcgatctcattcgctttcaatcag 9171693  T
Q  173 tttgttcaacttggcactcttc 194  Q
    |||||||||| |||| ||||||    
T  9171692 tttgttcaacatggcgctcttc 9171671  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 28132954 - 28133030
Alignment:
Q  103 ccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttc 179  Q
    |||| |||| |||||  ||||||||| ||||| |||| |  |||||||||||||||||||| |||||| ||||||||    
T  28132954 ccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttc 28133030  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 28133183 - 28133091
Alignment:
Q  103 ccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggcactcttct 195  Q
    |||| |||| |||||  ||||||||||||||| |||| |  |||||| |||| |||||||||| |||| |||||||  | |||||||||||||    
T  28133183 ccaaaggatcttctcaatctgatatcacaacgactcggcaatgaactcgatcacattcgtttttgatcagtttgtttcaattggcactcttct 28133091  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 195
Target Start/End: Original strand, 28219823 - 28219915
Alignment:
Q  103 ccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggcactcttct 195  Q
    |||| |||| |||||  ||||||||||||||  ||||||  |||| | |||||||||| ||||||||| |||| ||| | |||||||||||||    
T  28219823 ccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattccaattggcactcttct 28219915  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 4440739 - 4440664
Alignment:
Q  120 tctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttcaacttggcactcttct 195  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||| |||||   |||||| || |||| |||||||    
T  4440739 tctgatatcccaacgactcgacgttgaactcgatctcattcgtttccgatcaacttgttccacatggcgctcttct 4440664  T

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Target: scaffold0455 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 10860 - 10936
Alignment:
Q  103 ccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcattcgttttcgatcggtttgttc 179  Q
    |||| |||| |||||  ||||||||| ||||| |||| |  |||||||||||||||||||| |||||| ||||||||    
T  10860 ccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttc 10936  T

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