View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_high_7 (Length: 574)

Name: NF17615_high_7
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_high_7
NF17615_high_7
[»] chr3 (6 HSPs)
chr3 (208-558)||(30818833-30819194)
chr3 (18-83)||(30819328-30819393)
chr3 (18-83)||(30819476-30819541)
chr3 (351-401)||(30808421-30808471)
chr3 (508-558)||(30808279-30808329)
chr3 (141-192)||(30819219-30819270)
[»] chr6 (1 HSPs)
chr6 (225-317)||(14550903-14550998)
[»] chr8 (3 HSPs)
chr8 (278-323)||(30355804-30355849)
chr8 (282-311)||(29246372-29246401)
chr8 (282-319)||(41692417-41692454)
[»] scaffold0009 (1 HSPs)
scaffold0009 (279-319)||(258098-258138)
[»] chr7 (2 HSPs)
chr7 (283-319)||(15168618-15168654)
chr7 (288-319)||(685898-685929)
[»] chr2 (2 HSPs)
chr2 (288-319)||(3156810-3156841)
chr2 (283-320)||(29870572-29870609)
[»] chr5 (2 HSPs)
chr5 (289-319)||(8227496-8227526)
chr5 (289-319)||(40037300-40037330)
[»] chr4 (3 HSPs)
chr4 (289-319)||(15739691-15739721)
chr4 (225-318)||(42674791-42674887)
chr4 (282-319)||(1038965-1039002)
[»] chr1 (1 HSPs)
chr1 (226-315)||(38029894-38029986)
[»] scaffold1185 (1 HSPs)
scaffold1185 (288-320)||(2281-2313)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 208 - 558
Target Start/End: Complemental strand, 30819194 - 30818833
Alignment:
Q  208 gtatttatcaagaatagtttgttgtattttggtctgctattctatgcacatcttgtgataaagagtagatcttttt---tgtgataatatatctcatttt 304  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||    
T  30819194 gtatttattaagaatagtttgctgtattttggtctgctattctatgcacatcttgtgatagagagtagatctttttctttgtgataatatatctcatttt 30819095  T
Q  305 tgtttgttaaaaaaattataatgatcataattgacnnnnnnnnnn----ttgtgatcaaaacataaattgtagaatttcgtcgaaatcatgtatatttta 400  Q
    |||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30819094 tgtttgttaaaaaaattataatgatcataattgacaaaaaaaaaaaaaattgtgatcaaaacataaattgtagaatttcgtcgaaattatgtatatttta 30818995  T
Q  401 accattccttcnnnnnnnnt----gtatattttaaccatatgttagaaaccgacaaaactacaattataatatttcaaaacaggtattctgtctgtatgc 496  Q
    |||||| ||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  30818994 accatttcttcaaaaaaaaaaacagtatattttaaccatatgttagaaaccgacaaaactacaattataatatttcaaaacaggtattcagtctatatgc 30818895  T
Q  497 aatagccaacaaattctatatcttctcccccgttatgatcagaagaaacatggtttctaagt 558  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30818894 aatagccaacaaattctatatcttctcccccattatgatcagaagaaacatggtttctaagt 30818833  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 30819393 - 30819328
Alignment:
Q  18 aatgaaaggaatcacggtctgttctctaccaatgctgctaaatcaattatacaacttttggaagag 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30819393 aatgaaaggaatcacggtctgttctctaccaatgctgctaaatcaattatacaacttttggaagag 30819328  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 30819541 - 30819476
Alignment:
Q  18 aatgaaaggaatcacggtctgttctctaccaatgctgctaaatcaattatacaacttttggaagag 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30819541 aatgaaaggaatcacggtctgttctctaccaatgctgctaaatcaattatacagcttttggaagag 30819476  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 30808471 - 30808421
Alignment:
Q  351 tgtgatcaaaacataaattgtagaatttcgtcgaaatcatgtatattttaa 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30808471 tgtgatcaaaacataaattgtagaatttcgtcgaaatcatgtatattttaa 30808421  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 508 - 558
Target Start/End: Complemental strand, 30808329 - 30808279
Alignment:
Q  508 aattctatatcttctcccccgttatgatcagaagaaacatggtttctaagt 558  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  30808329 aattctatatcttctcccccattatgataagaagaaacatggtttctaagt 30808279  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 30819270 - 30819219
Alignment:
Q  141 ggttatcatatgtgttggcaataacctctcatctgtttgaccattagttgac 192  Q
    |||||||||||||||||||| |||||||| ||||||||| ||| ||||||||    
T  30819270 ggttatcatatgtgttggcagtaacctcttatctgtttggccaatagttgac 30819219  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 225 - 317
Target Start/End: Complemental strand, 14550998 - 14550903
Alignment:
Q  225 tttgttgtattttggtctgctattctatgcacatcttgtgataaagagtagatcttt---tttgtgataatatatctcatttttgtttgttaaaaa 317  Q
    |||||||||||||| | |||| |||| ||||||||||||| ||||||||||| |  |   ||| || ||||||||||||||||||||||| |||||    
T  14550998 tttgttgtattttgctttgctcttctttgcacatcttgtgctaaagagtagagccctccctttatggtaatatatctcatttttgtttgtcaaaaa 14550903  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 323
Target Start/End: Complemental strand, 30355849 - 30355804
Alignment:
Q  278 cttttttgtgataatatatctcatttttgtttgttaaaaaaattat 323  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||    
T  30355849 ctttttggtgttaatatatttcatttttgtttgttaaaaaaattat 30355804  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 311
Target Start/End: Original strand, 29246372 - 29246401
Alignment:
Q  282 tttgtgataatatatctcatttttgtttgt 311  Q
    ||||||||||||||||||||||||||||||    
T  29246372 tttgtgataatatatctcatttttgtttgt 29246401  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 41692417 - 41692454
Alignment:
Q  282 tttgtgataatatatctcatttttgtttgttaaaaaaa 319  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  41692417 tttgtgttaatatatctcattttggtttgttaaaaaaa 41692454  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 258138 - 258098
Alignment:
Q  279 ttttttgtgataatatatctcatttttgtttgttaaaaaaa 319  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  258138 ttttttgtggtaatatatctcatttttgcttgttaaaaaaa 258098  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 15168618 - 15168654
Alignment:
Q  283 ttgtgataatatatctcatttttgtttgttaaaaaaa 319  Q
    ||||| |||||||||||||||||||||||||||||||    
T  15168618 ttgtggtaatatatctcatttttgtttgttaaaaaaa 15168654  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 319
Target Start/End: Complemental strand, 685929 - 685898
Alignment:
Q  288 ataatatatctcatttttgtttgttaaaaaaa 319  Q
    ||||||||||||||||||||||||||||||||    
T  685929 ataatatatctcatttttgtttgttaaaaaaa 685898  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 319
Target Start/End: Original strand, 3156810 - 3156841
Alignment:
Q  288 ataatatatctcatttttgtttgttaaaaaaa 319  Q
    ||||||||||||||||||||||||||||||||    
T  3156810 ataatatatctcatttttgtttgttaaaaaaa 3156841  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 29870609 - 29870572
Alignment:
Q  283 ttgtgataatatatctcatttttgtttgttaaaaaaat 320  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  29870609 ttgtggtaacatatctcatttttgtttgttaaaaaaat 29870572  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 8227526 - 8227496
Alignment:
Q  289 taatatatctcatttttgtttgttaaaaaaa 319  Q
    |||||||||||||||||||||||||||||||    
T  8227526 taatatatctcatttttgtttgttaaaaaaa 8227496  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 40037300 - 40037330
Alignment:
Q  289 taatatatctcatttttgtttgttaaaaaaa 319  Q
    |||||||||||||||||||||||||||||||    
T  40037300 taatatatctcatttttgtttgttaaaaaaa 40037330  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 15739721 - 15739691
Alignment:
Q  289 taatatatctcatttttgtttgttaaaaaaa 319  Q
    |||||||||||||||||||||||||||||||    
T  15739721 taatatatctcatttttgtttgttaaaaaaa 15739691  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 42674887 - 42674791
Alignment:
Q  225 tttgttgtattttggtctgctattctatgcacatcttgtgataaagagtagatcttt---tttgtgataatatatctcatttttgtttgttaaaaaa 318  Q
    |||| ||||||||| | |||| |||||||| |  ||||||  |||||||||| || |   |||||| |||| |||||||||||||||||||||||||    
T  42674887 tttgctgtattttgctttgctcttctatgcgcgccttgtgccaaagagtagagctctccctttgtggtaatgtatctcatttttgtttgttaaaaaa 42674791  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 1039002 - 1038965
Alignment:
Q  282 tttgtgataatatatctcatttttgtttgttaaaaaaa 319  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  1039002 tttgtggtaatatatctcatttttgttagttaaaaaaa 1038965  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 315
Target Start/End: Original strand, 38029894 - 38029986
Alignment:
Q  226 ttgttgtattttggtctgctattctatgcacatcttgtgataaagagtagatcttttt---tgtgataatatatctcatttttgtttgttaaa 315  Q
    ||||||| ||||| |||||| ||||||||||  |||||| || | |||||| |  |||   |||| |||||||||||||||||||||||||||    
T  38029894 ttgttgttttttgttctgctcttctatgcactccttgtgctagatagtagaaccgtttcattgtggtaatatatctcatttttgtttgttaaa 38029986  T

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Target: scaffold1185 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 2281 - 2313
Alignment:
Q  288 ataatatatctcatttttgtttgttaaaaaaat 320  Q
    ||||||||||||||||| |||||||||||||||    
T  2281 ataatatatctcattttagtttgttaaaaaaat 2313  T

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