View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_low_12 (Length: 519)

Name: NF17615_low_12
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_low_12
NF17615_low_12
[»] chr2 (2 HSPs)
chr2 (13-499)||(7700770-7701256)
chr2 (289-366)||(15243990-15244068)
[»] chr5 (2 HSPs)
chr5 (290-338)||(23344909-23344957)
chr5 (290-366)||(35585344-35585421)
[»] chr3 (3 HSPs)
chr3 (300-364)||(5185193-5185257)
chr3 (290-369)||(9213528-9213608)
chr3 (290-326)||(51683614-51683650)
[»] chr4 (2 HSPs)
chr4 (290-319)||(3904721-3904750)
chr4 (314-366)||(46330918-46330971)
[»] scaffold0650 (1 HSPs)
scaffold0650 (290-338)||(23-71)
[»] chr7 (1 HSPs)
chr7 (290-349)||(47967941-47968001)
[»] chr1 (1 HSPs)
chr1 (290-338)||(19610818-19610866)


Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 13 - 499
Target Start/End: Complemental strand, 7701256 - 7700770
Alignment:
Q  13 aatatcaccaagttgttttaaaaatatagttcggaggcctagactcttgtgctacttaattaattaatatatacagctgttcatcatttaattattcaat 112  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7701256 aatatcaccaagttgtttttaaaatatagttgggaggcctggactcttgtgctacttaattcattaatatatacagctgttcatcatttaattattcaat 7701157  T
Q  113 accacgcttttatcctctcaactttattctctaacccacagtttgtgaatcatagacacattgtaccatattttcttgcatttagactaagttgcataac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7701156 accacgcttttatcctctcaactttattctctaacccacagtttgtgaatcatagacacattgtaccatattttcttgcatttagactaagttgcataac 7701057  T
Q  213 atttcagcagcgtaatatgagaggggaagccgtgatactactttcatctttgatactcgattccgctgattttagttaacaaaaattgatgtatttagtt 312  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7701056 atttcagcagcgtaatatgagaggggaagccgtgacactactttcatctttgatactcgattccgctgattttagttaacaaaaattgatgtatttagtt 7700957  T
Q  313 aaaaatttagactaaatatatcaactatgttgattcaaatatcttttataaataggatggaggagtattacaataaagatgatcaagtatgtattttgtt 412  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7700956 aaaaatttagattaaatatatcaactatgttgattcaaatatcttttataaataggatggaggagtattacaataaagatgatcgagtatgtattttgtt 7700857  T
Q  413 gactaaaatgtccattttaaaccaaaatttgcttcaatgaagtgacccgccttttccttgcatgaggccacgtctctggggcggaca 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7700856 gactaaaatgtccattttaaaccaaaatttgcttcaatgaagtgacccgccttttccttgcatgaggccacgtctcaggggcggaca 7700770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 366
Target Start/End: Complemental strand, 15244068 - 15243990
Alignment:
Q  289 taacaaaaattgatgtatttagttaaaaatttagactaaatatatcaactat-gttgattcaaatatcttttataaata 366  Q
    |||||||| || |||||| |  || ||||||||||||| ||| ||||||| | |||||||||||||||| |||||||||    
T  15244068 taacaaaagttaatgtatctgattcaaaatttagactagatacatcaacttttgttgattcaaatatctcttataaata 15243990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 23344909 - 23344957
Alignment:
Q  290 aacaaaaattgatgtatttagttaaaaatttagactaaatatatcaact 338  Q
    |||||||||| |||||||||||| |||||||| ||||| ||||||||||    
T  23344909 aacaaaaattaatgtatttagttcaaaatttatactaagtatatcaact 23344957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 35585344 - 35585421
Alignment:
Q  290 aacaaaaattgatgtatttagttaaaaatttagactaaatatatcaactat-gttgattcaaatatcttttataaata 366  Q
    |||||||||||||||||||  || ||| |||||  |||||| || |||| | |||||||||||||| |||||||||||    
T  35585344 aacaaaaattgatgtatttgatttaaagtttagtttaaatacattaacttttgttgattcaaatattttttataaata 35585421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 5185193 - 5185257
Alignment:
Q  300 gatgtatttagttaaaaatttagactaaatatatcaactatgttgattcaaatatcttttataaa 364  Q
    |||| |||||||| ||||||| | ||||||||||||||| | ||||||||||| ||| |||||||    
T  5185193 gatgcatttagtttaaaatttggtctaaatatatcaactttattgattcaaatgtctcttataaa 5185257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 369
Target Start/End: Complemental strand, 9213608 - 9213528
Alignment:
Q  290 aacaaaaattgatgtatttagttaaaaatttagactaaatatatcaac-tatgttgattcaaatatcttttataaatagga 369  Q
    ||||||||||||||||||| |||| ||| |||| | | ||| |||||| | |||||| | |||| ||||||||||||||||    
T  9213608 aacaaaaattgatgtatttggttataaaattagtccagatacatcaacttttgttgactaaaatgtcttttataaatagga 9213528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 51683614 - 51683650
Alignment:
Q  290 aacaaaaattgatgtatttagttaaaaatttagacta 326  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  51683614 aacaaaaattgatgtatttggttcaaaatttagacta 51683650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 319
Target Start/End: Original strand, 3904721 - 3904750
Alignment:
Q  290 aacaaaaattgatgtatttagttaaaaatt 319  Q
    ||||||||||||||||||||||||||||||    
T  3904721 aacaaaaattgatgtatttagttaaaaatt 3904750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 46330918 - 46330971
Alignment:
Q  314 aaaatttagactaaatatatcaa-ctatgttgattcaaatatcttttataaata 366  Q
    |||||||||||||||||||||||  | |||||||| |||| |||||||||||||    
T  46330918 aaaatttagactaaatatatcaatttttgttgatttaaatgtcttttataaata 46330971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 23 - 71
Alignment:
Q  290 aacaaaaattgatgtatttagttaaaaatttagactaaatatatcaact 338  Q
    ||||||| ||||||||||| ||||||||||||| | ||||| |||||||    
T  23 aacaaaagttgatgtatttggttaaaaatttagtccaaatacatcaact 71  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 47967941 - 47968001
Alignment:
Q  290 aacaaaaattgatgtatttagttaaaaatttagactaaatatatcaac-tatgttgattca 349  Q
    |||||||||| |||||||||||| |||||||  |||||||| || ||| ||||||||||||    
T  47967941 aacaaaaatttatgtatttagtttaaaatttgtactaaatacattaacttatgttgattca 47968001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 19610818 - 19610866
Alignment:
Q  290 aacaaaaattgatgtatttagttaaaaatttagactaaatatatcaact 338  Q
    ||||||||||||||||||||||| | ||| | ||||||||| |||||||    
T  19610818 aacaaaaattgatgtatttagttcataatatggactaaatacatcaact 19610866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University