View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_13 (Length: 492)
Name: NF17615_low_13
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Original strand, 41951058 - 41951524
Alignment:
| Q |
8 |
tgaaatgaaggatgacaggacaaaaaagttggaagagtacgagagtctcaactctcaagggtttggttgttttaactaagtctcacaaaatccacttcac |
107 |
Q |
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| T |
41951058 |
tgaaatgaaggatgacatgacaaaaaagttggaagagtacgagagtctcaactctcaagggtttggttgttttaactaagtctcacaaaatccacttaac |
41951157 |
T |
|
| Q |
108 |
aaaacaatatttcaaaatctagatatttttaaataccgagatattttataagtcgtaaaaaatatcaattaaatatcaccgaatttcgttatcctcaata |
207 |
Q |
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| T |
41951158 |
aaaacaatatttcaaaatctagatatttttaaataccgaaatattttataagtcgtaaaaaatatcaattaaacatcaccgaatttcgttatcctcaata |
41951257 |
T |
|
| Q |
208 |
aaagattatcttgataaacttgattgaataccacatactaacatttttacattttataagtctttattgaatactacaaattcttttattatcaaagagt |
307 |
Q |
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| T |
41951258 |
aaagattatcttgataaacttgattgaataccacatactaacatttttacattttataagtctttattgaataccacaaattcttttattatcaaagagt |
41951357 |
T |
|
| Q |
308 |
cttaaaatctcttgaaatcccaatccaatacaccatccaaaattagtggctttggtgattcatttggtagatgtgtgacttactccaaagcatgggaagc |
407 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41951358 |
cttaaaatctcttgaaatcccaatccaatacaccacccaaaattagtggctttggtgattcatttggtagatgtgtgacttactcccaagcatgggaagc |
41951457 |
T |
|
| Q |
408 |
atacaagctgtaaggttcttttgaaagaaaagggcgggagagaatgtttgaggttaggagtcaatag |
474 |
Q |
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| T |
41951458 |
atacaagctgtaaggttcttttgaaagaaaagggcaggagagaatgtttaaggttaggagtcaatag |
41951524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 17790469 - 17790437
Alignment:
| Q |
309 |
ttaaaatctcttgaaatcccaatccaatacacc |
341 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |
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| T |
17790469 |
ttaaaatctcttgaaatctcaatccaatacacc |
17790437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 43277034 - 43276978
Alignment:
| Q |
150 |
attttataagtcgtaaaaaatatcaattaaatatcaccgaatttcgttatcctcaat |
206 |
Q |
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||||||||||| || |||||| |||||||||||| ||||||||| ||||| ||||| |
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| T |
43277034 |
attttataagttgtgaaaaatctcaattaaatattaccgaattttattatcttcaat |
43276978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 42657747 - 42657715
Alignment:
| Q |
309 |
ttaaaatctcttgaaatcccaatccaatacacc |
341 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
42657747 |
ttaaaatctcttgaaatctcaatccaatacacc |
42657715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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