View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_18 (Length: 450)
Name: NF17615_low_18
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 41638513 - 41638082
Alignment:
| Q |
1 |
caacgcgcgtcagatttttagagcaatctggagttggagaggaccacatagaattcattgtttctcctattctgaatcaagctgatcaatacaaatctga |
100 |
Q |
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| T |
41638513 |
caacgcgcgtcagatttttagagcaatctggagttggagaggaccacatagaattcattgtttctcctattctgaatcaagctgatcaatacaaatctga |
41638414 |
T |
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| Q |
101 |
tgtagtaattagatggcagcctccacatgacagtttcatagctcttaacattgatggttccgtggttgaacacggaagaaaagcagcgtgtggaggggtt |
200 |
Q |
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| T |
41638413 |
tgtagtaattagatggcagcctccacatgacagtttcatagctcttaacattgatggttccgtggttgaacacggaagaaaagcagcgtgtggaggggtt |
41638314 |
T |
|
| Q |
201 |
atgcaaatggaaaatttcttgttgcttatgtggcgcgtattcatacttgttcagtgcttaagactgcacggagtcctggattctgtagaattaaagttgg |
300 |
Q |
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| T |
41638313 |
atgctaatggaaaatttcttgttgcttatgtggcgcgtattcatacttgttcagtgcttaagactgcacggagtcctggattctgtagaattaaagttgg |
41638214 |
T |
|
| Q |
301 |
ttaaagatggttgtccaccaactcatcctcatcccctacatatgttggtggaaaatattcatcaaatccatcgcaactcaggtttggttgtttgaaatca |
400 |
Q |
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| T |
41638213 |
ttaaagatggttgtccaccaactcatcctcatcccctacatatgttggtggaaaatattcatcaaatccatcgcaactcaggtttggttgtttgaaatca |
41638114 |
T |
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| Q |
401 |
ttggctcagagaagccaattaggtggttgatc |
432 |
Q |
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| T |
41638113 |
ttggctcagagaagccaattaggtggttgatc |
41638082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2719341 - 2719403
Alignment:
| Q |
1 |
caacgcgcgtcagatttttagagcaatctggagttggagaggaccacatagaattcattgttt |
63 |
Q |
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| T |
2719341 |
caacgcgcatcagatttttagagcaatttggagttggagaggaccacatagaattcaatgttt |
2719403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 431
Target Start/End: Complemental strand, 42807286 - 42807184
Alignment:
| Q |
328 |
ctcatcccctacatatgttggtggaaaatattcatcaaatccatcgcaactcaggtttggttgtttgaaatcattggctcagagaagccaattaggtggt |
427 |
Q |
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||||||||| ||||| || |||||||||||||||||||||||| |||||| ||||||||| ||||| |||||| | || |||||| ||| ||||||||| |
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| T |
42807286 |
ctcatccccaacatacattagtggaaaatattcatcaaatccattgcaacttaggtttggtcgtttggaatcatagcct-agagaaaccatttaggtggt |
42807188 |
T |
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| Q |
428 |
tgat |
431 |
Q |
| |
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|||| |
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| T |
42807187 |
tgat |
42807184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 253
Target Start/End: Original strand, 32105333 - 32105365
Alignment:
| Q |
221 |
gttgcttatgtggcgcgtattcatacttgttca |
253 |
Q |
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| T |
32105333 |
gttgcttatgtggcgcgtattcatccttgttca |
32105365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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