View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_low_2 (Length: 991)

Name: NF17615_low_2
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_low_2
NF17615_low_2
[»] chr5 (12 HSPs)
chr5 (715-972)||(3436834-3437091)
chr5 (238-694)||(20338130-20338592)
chr5 (235-557)||(3436362-3436684)
chr5 (243-557)||(40917525-40917841)
chr5 (13-201)||(3436140-3436328)
chr5 (39-201)||(20337930-20338093)
chr5 (581-645)||(4975762-4975826)
chr5 (604-693)||(3436709-3436803)
chr5 (603-645)||(38976236-38976278)
chr5 (581-650)||(38986571-38986640)
chr5 (581-653)||(3296184-3296256)
chr5 (591-650)||(35038728-35038787)
[»] chr7 (23 HSPs)
chr7 (238-557)||(41201942-41202260)
chr7 (238-557)||(49112686-49113007)
chr7 (238-534)||(17475357-17475652)
chr7 (238-534)||(17577562-17577857)
chr7 (238-557)||(17510941-17511259)
chr7 (238-557)||(17541955-17542273)
chr7 (322-557)||(4267005-4267239)
chr7 (13-201)||(41202297-41202486)
chr7 (13-199)||(49113046-49113232)
chr7 (18-201)||(17510720-17510904)
chr7 (18-201)||(17542310-17542494)
chr7 (13-190)||(4267354-4267532)
chr7 (13-201)||(17475131-17475320)
chr7 (13-201)||(17577894-17578083)
chr7 (581-653)||(17475707-17475779)
chr7 (581-653)||(17577435-17577507)
chr7 (238-294)||(4267246-4267302)
chr7 (604-693)||(17511295-17511389)
chr7 (604-693)||(17541825-17541919)
chr7 (604-692)||(41200245-41200338)
chr7 (606-645)||(22791285-22791324)
chr7 (591-650)||(23025231-23025290)
chr7 (603-652)||(35709960-35710009)
[»] chr1 (18 HSPs)
chr1 (238-534)||(48470061-48470360)
chr1 (238-554)||(17331423-17331746)
chr1 (13-201)||(45566237-45566426)
chr1 (13-201)||(48469835-48470024)
chr1 (238-414)||(49228942-49229118)
chr1 (16-201)||(17331783-17331969)
chr1 (238-421)||(45566012-45566200)
chr1 (13-201)||(49228714-49228904)
chr1 (238-422)||(4221128-4221303)
chr1 (439-534)||(45565933-45566028)
chr1 (439-541)||(4221043-4221145)
chr1 (604-694)||(48470420-48470515)
chr1 (581-694)||(17331282-17331400)
chr1 (13-57)||(23827949-23827993)
chr1 (581-651)||(45039046-45039116)
chr1 (604-645)||(6501683-6501724)
chr1 (604-694)||(49229156-49229250)
chr1 (604-653)||(45565826-45565875)
[»] chr2 (9 HSPs)
chr2 (238-532)||(9470993-9471288)
chr2 (246-405)||(17920992-17921151)
chr2 (13-191)||(9471336-9471515)
chr2 (39-201)||(17921196-17921358)
chr2 (472-557)||(17920908-17920993)
chr2 (604-694)||(9470844-9470939)
chr2 (581-651)||(15614124-15614194)
chr2 (613-693)||(17920808-17920893)
chr2 (611-653)||(20922765-20922807)
[»] chr6 (9 HSPs)
chr6 (238-557)||(12076290-12076607)
chr6 (243-555)||(12271866-12272180)
chr6 (13-201)||(12076071-12076253)
chr6 (13-201)||(12271636-12271825)
chr6 (604-653)||(12076634-12076683)
chr6 (581-653)||(17869232-17869304)
chr6 (576-650)||(31472452-31472526)
chr6 (606-651)||(20139282-20139327)
chr6 (606-651)||(22193542-22193587)
[»] chr3 (11 HSPs)
chr3 (238-557)||(50737586-50737909)
chr3 (238-557)||(50774946-50775269)
chr3 (13-201)||(50737358-50737549)
chr3 (13-201)||(50775306-50775497)
chr3 (238-421)||(26844183-26844365)
chr3 (439-557)||(26844349-26844467)
chr3 (604-694)||(50737934-50738029)
chr3 (604-694)||(50774825-50774920)
chr3 (581-650)||(21389812-21389881)
chr3 (592-645)||(42854272-42854325)
chr3 (606-651)||(21392693-21392738)
[»] chr4 (13 HSPs)
chr4 (238-421)||(16029958-16030140)
chr4 (238-421)||(50004987-50005170)
chr4 (439-557)||(50004885-50005003)
chr4 (439-554)||(16029859-16029974)
chr4 (13-115)||(16030229-16030332)
chr4 (136-201)||(16030177-16030242)
chr4 (13-107)||(50005298-50005389)
chr4 (581-651)||(32767650-32767720)
chr4 (576-651)||(44341262-44341337)
chr4 (137-171)||(50005232-50005266)
chr4 (606-651)||(43286255-43286300)
chr4 (581-653)||(9455305-9455377)
chr4 (605-653)||(34859052-34859100)
[»] chr8 (3 HSPs)
chr8 (581-653)||(15243839-15243911)
chr8 (605-653)||(28968259-28968307)
chr8 (611-694)||(2349713-2349800)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 715 - 972
Target Start/End: Original strand, 3436834 - 3437091
Alignment:
Q  715 cattttgacagctccagtgagaaggtgaaaaaagtaacggtagtataagatgaaggattatccctttattttgggcttgggatatatatgatgaaaaaat 814  Q
    |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3436834 cattttgacagctctaatgagaaggtgaaaaaagtaacggcagtataagatgaaggattatccctttattttgggcttgggatatatatgatgaaaaaat 3436933  T
Q  815 ataaaataataatagattatacacgtgtcaagcaacgactggatgtacgtatattggttcgaaaccacacaccaaaacataaaaacggttgaaattccct 914  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3436934 ataaaataataatagattatacacgtgtcaagcaacgactggatgtacgtatattggttcgaaaccacacaccaaaacataaaaacggttgaaattccct 3437033  T
Q  915 ccaaaaggcgtacattagctacctacgccacgcaagaaaaatctccgattatggctac 972  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437034 ccaaaaggcgtacattagctacctacgccacgcaagaaaaatctccgattatggctac 3437091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 238 - 694
Target Start/End: Original strand, 20338130 - 20338592
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20338130 tactaaactgagttaaaagtgaggaaaggaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 20338229  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtcnnnnnnnt 437  Q
    |||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||        |    
T  20338230 aggagaacgagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcggtaaaaaaaat 20338329  T
Q  438 aaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtccttc 537  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||    
T  20338330 aaattagaagtaacaaaacaaatgaacataagtatgtacaatttttagaagagagaatgacttaaatatcaaatgaacataattatttgggctatccgtc 20338429  T
Q  538 tagtatagtgtaaaaaataa-ggnnnnnnnnnnccggactgccaggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccg 636  Q
     |||   || |||||||||| |            |||  |||| |||||||||||| |||||||| ||||||||||||  |||||||||||||||| |||    
T  20338430 gagtcccgtataaaaaataacgcttttttttttgcgggttgccgggctgcccttagtccgaacgggctagccctaacgagcttcgggctttttcggaccg 20338529  T
Q  637 ggctaaaaatccctgaa-----tcgagcagctatttatcgacccagaccctacattttattcg 694  Q
    |||||||||||||||||     ||| || ||||||||||| || || ||||||||||||||||    
T  20338530 ggctaaaaatccctgaaaaaattcgggctgctatttatcggcctaggccctacattttattcg 20338592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 235 - 557
Target Start/End: Original strand, 3436362 - 3436684
Alignment:
Q  235 tgatactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacat 334  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3436362 tgatactaaactgagttgacagtgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacat 3436461  T
Q  335 cataggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtcnnnnn 434  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |          
T  3436462 cataggagaacaaaagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcgataaaaaa 3436561  T
Q  435 nntaaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtcc 534  Q
       ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  3436562 aaaaaaatagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacataattatttggactgtcc 3436661  T
Q  535 ttctagtatagtgtaaaaaataa 557  Q
     ||||||  | ||||||||||||    
T  3436662 gtctagtccaatgtaaaaaataa 3436684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 243 - 557
Target Start/End: Original strand, 40917525 - 40917841
Alignment:
Q  243 aactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcataggag 342  Q
    ||||||||||| ||  || ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40917525 aactgagttgaaagtcagtaaaggaaatcacaatgcaactataagcaaaagggtttcaaaagtggggaataaaagcataacgtttttaacatcataggag 40917624  T
Q  343 aacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtcnnnnnnntaa-at 441  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||        || ||    
T  40917625 aacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcggtcaaaaaaaaaatat 40917724  T
Q  442 tagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaa-taccaaatgaacatgattatttgggctgtccttctag 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| || ||    
T  40917725 tagaagtaacaaaacaaatgaacataattatatacaatttttagaagatagaatgacttaaagtaccaaatgaacataattatttgggctgtccgtccag 40917824  T
Q  541 tatagtgtaaaaaataa 557  Q
    |  ||||||||||||||    
T  40917825 tccagtgtaaaaaataa 40917841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 3436140 - 3436328
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaatatatatttattaaatttatttgctaatcagtatagttacca 112  Q
    |||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||    
T  3436140 aagagaataataattatccatactaatatagtaacattgacataattgtacactaaaaaatatatttattaaattcatttgctaaccagtatagttacca 3436239  T
Q  113 tatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3436240 tatataatttttttagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 3436328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 39 - 201
Target Start/End: Original strand, 20337930 - 20338093
Alignment:
Q  39 catagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttaccatatataannnnnnnagggaacaaca 137  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| |||| || || ||||||||||| ||||||||       |||||||| ||    
T  20337930 catagtaacattaacataattgtacactaaaaaagtatatttattaaattcatttactgatgagtatagttactatatataattcttttagggaacagca 20338029  T
Q  138 tagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20338030 tagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 20338093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 581 - 645
Target Start/End: Original strand, 4975762 - 4975826
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaa 645  Q
    |||||||| | ||||||| || |||||||||||||||| ||||||||||||| ||||||||||||    
T  4975762 ggctgcccgtggcccgaatgggctagccctaacggactccgggctttttcggaccgggctaaaaa 4975826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 604 - 693
Target Start/End: Original strand, 3436709 - 3436803
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa-----tcgagcagctatttatcgacccagaccctacattttattc 693  Q
    |||||| ||||| ||||||||||||||| ||||||||||||| |||| ||     ||| |||||||||||| | || ||||||||||||||||||    
T  3436709 tagcccgaacgggcttcgggctttttcgagccgggctaaaaagccctaaaaaaattcgggcagctatttattggccaagaccctacattttattc 3436803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 603 - 645
Target Start/End: Original strand, 38976236 - 38976278
Alignment:
Q  603 ctagccctaacggacttcgggctttttcgggccgggctaaaaa 645  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  38976236 ctagccctaacgggctacgggctttttcgggccgggctaaaaa 38976278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 650
Target Start/End: Original strand, 38986571 - 38986640
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccct 650  Q
    |||||||||||||||||  || | ||||| || ||| | |||||||||||||||||||||||||| ||||    
T  38986571 ggctgcccttagcccgagtgggccagcccaaatggattgcgggctttttcgggccgggctaaaaagccct 38986640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 581 - 653
Target Start/End: Complemental strand, 3296256 - 3296184
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa 653  Q
    ||||||||  ||||||| | | ||||||||||||  || |||||||||| ||||||||||||||| |||||||    
T  3296256 ggctgcccgcagcccgaccaggctagccctaacgagctccgggcttttttgggccgggctaaaaagccctgaa 3296184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 650
Target Start/End: Original strand, 35038728 - 35038787
Alignment:
Q  591 agcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccct 650  Q
    ||||||||||| ||||||||||||| |   |||||||| |||||||||||||||| ||||    
T  35038728 agcccgaacgggctagccctaacgggccaagggcttttacgggccgggctaaaaagccct 35038787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 238 - 557
Target Start/End: Complemental strand, 41202260 - 41201942
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41202260 tactaaactgagttgatagtgaggaaaggaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 41202161  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtcnnnnnnnt 437  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||            
T  41202160 aggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcggtcaaaaaaa- 41202062  T
Q  438 aaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtccttc 537  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  ||||| ||    
T  41202061 aaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaatatcaaatgaacataattatttggattgtccgtc 41201962  T
Q  538 tagtatagtgtaaaaaataa 557  Q
     | |  ||||||||||||||    
T  41201961 caatccagtgtaaaaaataa 41201942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 238 - 557
Target Start/End: Complemental strand, 49113007 - 49112686
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagg----gtttcaaaagtggggaataaaagcataacatttttaaca 333  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  49113007 tactaaactgagttgacagtgaggaaaggaaatcacaatgcaaccataagcaaaaggtagagtttcaaaagtggggaataaaagcataacatttttaaca 49112908  T
Q  334 tcataggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtcnnnn 433  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||         
T  49112907 tcataggagaacaagagttgagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcggt-aaaa 49112809  T
Q  434 nnntaaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtc 533  Q
        ||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  49112808 aaaaaaaatagaagtaacaaaacaaat-aacataatcatatacaatttttagaagagagaatgacttaaataccaaatgaacataattatttgggctgtc 49112710  T
Q  534 cttctagtatagtgtaaaaaataa 557  Q
    | || |||  ||||||||||||||    
T  49112709 cgtccagtcaagtgtaaaaaataa 49112686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 238 - 534
Target Start/End: Original strand, 17475357 - 17475652
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  17475357 tactaaactgagttaaaagtgaggaaaggaaatcacaatgcaaccataagcaaaagggtttcaaaagtgaggaataaaagcataacatttttaatatcat 17475456  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtcnnnnnnnt 437  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||            
T  17475457 aggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaaataacaaaatttcggtcaaaaaaa- 17475555  T
Q  438 aaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtcc 534  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||    
T  17475556 aaattagaagtaacaaaacaaatgaacataagtatatacaatttttagaagaaagaataacttaaataccaaatgaacataattagttgggctgtcc 17475652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 238 - 534
Target Start/End: Complemental strand, 17577857 - 17577562
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  17577857 tactaaactgagttaaaagtgaggaaaggaaatcacaatgcaaccataagcaaaagggtttcaaaagtgaggaataaaagcataacatttttaatatcat 17577758  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtcnnnnnnnt 437  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||            
T  17577757 aggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaaataacaaaatttcggtcaaaaaaa- 17577659  T
Q  438 aaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtcc 534  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||    
T  17577658 aaattagaagtaacaaaacaaatgaacataagtatatacaatttttagaagaaagaataacttaaataccaaatgaacataattagttgggctgtcc 17577562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 238 - 557
Target Start/End: Original strand, 17510941 - 17511259
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  17510941 tactaaactgagttaatagtgaggaaaggaaatcacaatgcaaccataagcaaaaggatttcaaaagtgaggaataaaagcataacatttttaacatcat 17511040  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtcnnnnnnnt 437  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||            
T  17511041 aggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcggtcaaaaaaa- 17511139  T
Q  438 aaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtccttc 537  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| |||| ||||||||||| ||    
T  17511140 aaaatagaagtaacaaaacaaatgaacataagtatatacaatttttagaagaaagaataacttaaataccgaatgaacataattagttgggctgtccgtc 17511239  T
Q  538 tagtatagtgtaaaaaataa 557  Q
     |||   |||||||||||||    
T  17511240 cagttccgtgtaaaaaataa 17511259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 238 - 557
Target Start/End: Complemental strand, 17542273 - 17541955
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    |||||||||||||| | || ||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  17542273 tactaaactgagttaatagtgaggaaaggaaatcacaatgcaaccataagcaaaaggatttcaaaagtgaggaataaaagcataacatttttaacatcat 17542174  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtcnnnnnnnt 437  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||            
T  17542173 aggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcggtcaaaaaaa- 17542075  T
Q  438 aaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtccttc 537  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| |||| ||||||||||| ||    
T  17542074 aaaatagaagtaacaaaacaaatgaacataagtatatacaatttttagaagaaagaataacttaaataccgaatgaacataattagttgggctgtccgtc 17541975  T
Q  538 tagtatagtgtaaaaaataa 557  Q
     |||   |||||||||||||    
T  17541974 cagttccgtgtaaaaaataa 17541955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 322 - 557
Target Start/End: Complemental strand, 4267239 - 4267005
Alignment:
Q  322 acatttttaacatcataggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaa 421  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  4267239 acatttttaacatcataggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaa 4267140  T
Q  422 tttcggtcnnnnnnntaaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgatt 521  Q
    |||||||         |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  4267139 tttcggt-aacaaaaaaaattaaaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaatatcaaatgaacataatt 4267041  T
Q  522 atttgggctgtccttctagtatagtgtaaaaaataa 557  Q
    ||||||||||||| || |||  ||||||||||||||    
T  4267040 atttgggctgtccgtccagtccagtgtaaaaaataa 4267005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 41202486 - 41202297
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttacc 111  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||     
T  41202486 aagagaataacaattatccatactaagatagtaacattaacataattgtacactaaaaaagtatatttattaaattcatttgctaatcagtatagttact 41202387  T
Q  112 atatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41202386 atatataatttttttagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 41202297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 49113232 - 49113046
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttacc 111  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||     
T  49113232 aagagaataacaattattcatactaacatagtaacat-aacataattgtacactaaaaaagtatatttattaaattcatttgctaatcagtatagttact 49113134  T
Q  112 atatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacaca 199  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49113133 atatataatttttttagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacaca 49113046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 17510720 - 17510904
Alignment:
Q  18 aataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttaccatata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||| ||||||||||| |||||    
T  17510720 aataacaattatccatactaacatagtaacattaacataattgtacactaaaaaagtatattcattaaattcatttgctaattagtatagttactatata 17510819  T
Q  117 taannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    |||       ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510820 taatttttttagggaacagtatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 17510904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 17542494 - 17542310
Alignment:
Q  18 aataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttaccatata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||| ||||||||||| |||||    
T  17542494 aataacaattatccatactaacatagtaacattaacataattgtacactaaaaaagtatattcattaaattcatttgctaattagtatagttactatata 17542395  T
Q  117 taannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    |||       ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17542394 taatttttttagggaacagtatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 17542310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 4267532 - 4267354
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttacc 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| |||||||||     
T  4267532 aagagaataacaattatccatactaacatagtaacattaacataattgtacactaaaaaagtatatttattaaattcatttgctaatcaatatagttact 4267433  T
Q  112 atatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaatta 190  Q
    ||||||||       |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4267432 atatataattttttcagggaacagcatagtcactatattgtcttgcaagatccacatatatgatataattaattaatta 4267354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 17475131 - 17475320
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttacc 111  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||| |||||||| |||||||||| |||||||||||     
T  17475131 aagagaataacaattatccatactaatatagtaacattaacataattgtacattaaaaaagtatattcattaaattcatttgctaattagtatagttact 17475230  T
Q  112 atatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    ||||||||       ||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17475231 atatataatttttttagggaacagtatagtcactatattgtcttacaagatccacatatatgatataattaattaattagccaacacatg 17475320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 17578083 - 17577894
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttacc 111  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||| |||||||| |||||||||| |||||||||||     
T  17578083 aagagaataacaattatccatactaatatagtaacattaacataattgtacattaaaaaagtatattcattaaattcatttgctaattagtatagttact 17577984  T
Q  112 atatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    ||||||||       ||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17577983 atatataatttttttagggaacagtatagtcactatattgtcttacaagatccacatatatgatataattaattaattagccaacacatg 17577894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 581 - 653
Target Start/End: Original strand, 17475707 - 17475779
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa 653  Q
    ||||| ||||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||| |||||||    
T  17475707 ggctggccttagcccgaacgggctagccctaacgagcttcgggctttttcgggtcgggctaaaaaaccctgaa 17475779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 581 - 653
Target Start/End: Complemental strand, 17577507 - 17577435
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa 653  Q
    ||||| ||||||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||| |||||||    
T  17577507 ggctggccttagcccgaacgggctagccctaacgagcttcgggctttttcgggtcgggctaaaaaaccctgaa 17577435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 4267302 - 4267246
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagg 294  Q
    ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  4267302 tactaaactgagttgacagtgaagaaaggaaatcacaatgcaaccataagcaaaagg 4267246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 604 - 693
Target Start/End: Original strand, 17511295 - 17511389
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa-----tcgagcagctatttatcgacccagaccctacattttattc 693  Q
    |||||| ||||  ||||||||||||||||||||||||||||| |||||||     ||| ||  |||||||||| |||||  ||||||||||||||    
T  17511295 tagcccgaacgagcttcgggctttttcgggccgggctaaaaaaccctgaaaaaattcgggctactatttatcggcccaggacctacattttattc 17511389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 604 - 693
Target Start/End: Complemental strand, 17541919 - 17541825
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa-----tcgagcagctatttatcgacccagaccctacattttattc 693  Q
    |||||| ||||  ||||||||||||||||||||||||||||| |||||||     ||| ||  |||||||||| |||||  ||||||||||||||    
T  17541919 tagcccgaacgagcttcgggctttttcgggccgggctaaaaaaccctgaaaaaattcgggctactatttatcggcccaggacctacattttattc 17541825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 692
Target Start/End: Complemental strand, 41200338 - 41200245
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa-----tcgagcagctatttatcgacccagaccctacattttatt 692  Q
    |||||| ||||  |||||||||||||||| |||||||||||| |||||||     ||| || ||||||||||| | ||| ||||||||||||||    
T  41200338 tagcccgaacgtgcttcgggctttttcggaccgggctaaaaaaccctgaaaaaattcgggctgctatttatcggctcaggccctacattttatt 41200245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 606 - 645
Target Start/End: Original strand, 22791285 - 22791324
Alignment:
Q  606 gccctaacggacttcgggctttttcgggccgggctaaaaa 645  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  22791285 gccctaacgggcttcgggctttatcgggccgggctaaaaa 22791324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 650
Target Start/End: Complemental strand, 23025290 - 23025231
Alignment:
Q  591 agcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccct 650  Q
    |||||| |||| ||||||||||||| ||  |||||||| |||||||||||||||| ||||    
T  23025290 agcccggacgggctagccctaacgggctaagggcttttacgggccgggctaaaaagccct 23025231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 603 - 652
Target Start/End: Complemental strand, 35710009 - 35709960
Alignment:
Q  603 ctagccctaacggacttcgggctttttcgggccgggctaaaaatccctga 652  Q
    ||||||| |||||  | |||||||||||||||||||||||||| ||||||    
T  35710009 ctagcccgaacgggttgcgggctttttcgggccgggctaaaaagccctga 35709960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 238 - 534
Target Start/End: Original strand, 48470061 - 48470360
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  48470061 tactaaactgagttgatagtgaggaaaggaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggagtaaaagcataacatttttaacatcat 48470160  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtc---nnnnn 434  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||            
T  48470161 aggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcggtcaaaaaaaa 48470260  T
Q  435 nntaaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtcc 534  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48470261 taaaaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacataattatttgggctgtcc 48470360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 238 - 554
Target Start/End: Complemental strand, 17331746 - 17331423
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagg----gtttcaaaagtggggaataaaagcataacatttttaaca 333  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  17331746 tactaaacttagttgacagtgaggaaaggaaatcacaatgcaaccataagcaaaaggtagggtttcaaaagtggggaataaaagcataacatttttaaca 17331647  T
Q  334 tcataggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtc---n 430  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||        
T  17331646 tcataggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcggtcaaaa 17331547  T
Q  431 nnnnnntaaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggct 530  Q
           ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||  |||| |    
T  17331546 aaaataaaaattagaagtaacaaaacaaataaacataattatatacaatttttaaaagagagaatgacttaaataccaaatgaacataattacgtgggtt 17331447  T
Q  531 gtccttctagtatagtgtaaaaaa 554  Q
    |||| || |||  |||||||||||    
T  17331446 gtccgtccagtccagtgtaaaaaa 17331423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 45566426 - 45566237
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttacc 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||     
T  45566426 aagagaataacaattatccatactaacatagtaacattaacataattgtacactaaaaaagtatatttattaaattcatttgctaatcagtatagttact 45566327  T
Q  112 atatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45566326 atatataatttttttagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 45566237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 48469835 - 48470024
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttacc 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||     
T  48469835 aagagaataacaattatccatactaacatagtaacattaacataattgtacactaaaaaagtatatttattaaattcatttgctaatcagtatagttact 48469934  T
Q  112 atatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48469935 atatataatttttttagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 48470024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 238 - 414
Target Start/End: Original strand, 49228942 - 49229118
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49228942 tactaaactgagttgacggtgaggaaaggaaatcacaatgcaaccataagcaaaagggtttcaaaagtgggaaataaaagcataacatttttaacatcat 49229041  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagt 414  Q
    |||||||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  49229042 aggagaacaagagtcaagaaacaatgatgaaacatgaccactttgatttttgtttttccttcattttaattagaagt 49229118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 17331969 - 17331783
Alignment:
Q  16 aaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttaccata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||||| |||    
T  17331969 aaaataacaattatccatactaacatagtaacattaacataattgtacactaaaaaagtatatttattaaattcatttgttaatcagtatagttactata 17331870  T
Q  115 tataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    |||||       |||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17331869 tataatttttctagggaacatcatagtccctatattgtcttgcaagatccacatatataatataattaattaattagccaacacatg 17331783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 238 - 421
Target Start/End: Complemental strand, 45566200 - 45566012
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagg----gtttcaaaagtggggaataaaagcataacatttttaaca 333  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  45566200 tactaaactgagttgacagtgaggaaagaaaatcacaatgcaaccataagcaaaaggtagggtttcaaaagtggggaataaaagcataacatttttaaca 45566101  T
Q  334 tcataggagaacaagagtt-aagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaa 421  Q
    ||||||||||| ||||||| || ||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  45566100 tcataggagaagaagagttaaaaaaacaatgatgaaacacgatcactttgatttttgtttttccttcattttaattagaagtaacaaaa 45566012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 49228714 - 49228904
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata--tatatttattaaatttatttgctaatcagtatagttac 110  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||| |||||||||| |||||| ||||    
T  49228714 aagagaataacaattattcatactaacatagtaacattaacataattgtacactaaaaaaagtatatttattaaattcatttgctaattagtataattac 49228813  T
Q  111 catatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
     ||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49228814 tatatataatttttttagggaacatcatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 49228904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 238 - 422
Target Start/End: Complemental strand, 4221303 - 4221128
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    ||||||||||||||||||| || |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||              
T  4221303 tactaaactgagttgacagtgaagaaaggaaatcacaatgcaactataagcaaaagggttttaaaagtggggaataaaagcataacatttc--------- 4221213  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaat 422  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  4221212 aggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaat 4221128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 439 - 534
Target Start/End: Complemental strand, 45566028 - 45565933
Alignment:
Q  439 aattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtcc 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45566028 aattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacataattatttgggctgtcc 45565933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 439 - 541
Target Start/End: Complemental strand, 4221145 - 4221043
Alignment:
Q  439 aattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtccttct 538  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |||    
T  4221145 aattagaagtaacaaaataaatgaacataattatatacaatttttagaagagagaatgacttaaatatcaaatgaacataactatttgggctgtccgtct 4221046  T
Q  539 agt 541  Q
    |||    
T  4221045 agt 4221043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 604 - 694
Target Start/End: Original strand, 48470420 - 48470515
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa-----tcgagcagctatttatcgacccagaccctacattttattcg 694  Q
    |||||| ||||| |||||||||||||||||||||||||||||  ||||||     ||| || ||||||||||| ||||||||||||||||||||||    
T  48470420 tagcccgaacgggcttcgggctttttcgggccgggctaaaaagtcctgaaaaaattcgggctgctatttatcggcccagaccctacattttattcg 48470515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 581 - 694
Target Start/End: Complemental strand, 17331400 - 17331282
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa-----tcgagcagctatttatcgaccc 675  Q
    |||||||||||||| |||||  ||||||||||||| |||||||||||||||| || | ||||||| |||||||     | |||| |||||||||||  ||    
T  17331400 ggctgcccttagcctgaacgagctagccctaacgggcttcgggctttttcggaccagcctaaaaagccctgaaaaaacttgagctgctatttatcggtcc 17331301  T
Q  676 agaccctacattttattcg 694  Q
    || ||||||||||||||||    
T  17331300 aggccctacattttattcg 17331282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 23827949 - 23827993
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataa 57  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  23827949 aagagaataacaattatccatactaacatagtaacattaacataa 23827993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 581 - 651
Target Start/End: Complemental strand, 45039116 - 45039046
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccctg 651  Q
    ||||||||||||||||| ||| | ||||| |||||  | |||||||||||||| ||||||||||| |||||    
T  45039116 ggctgcccttagcccgagcgggccagcccaaacgggttgcgggctttttcgggtcgggctaaaaaaccctg 45039046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 604 - 645
Target Start/End: Complemental strand, 6501724 - 6501683
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaa 645  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  6501724 tagcccaaacgggcttcgggctttttcgggccgggctaaaaa 6501683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 694
Target Start/End: Original strand, 49229156 - 49229250
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa-----tcgagcagctatttatcgacccagaccctacattttattcg 694  Q
    |||||| ||||| ||||||||||||||||| ||||||||||| |||||||      || || ||||||||||| |||| ||||| |||||||||||    
T  49229156 tagcccgaacgggcttcgggctttttcggg-cgggctaaaaagccctgaaaaaatccgggctgctatttatcggcccaaaccctgcattttattcg 49229250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 604 - 653
Target Start/End: Complemental strand, 45565875 - 45565826
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa 653  Q
    |||||| ||||| |||| || ||||||||||||||||||||| |||||||    
T  45565875 tagcccgaacgggcttcaggttttttcgggccgggctaaaaagccctgaa 45565826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 238 - 532
Target Start/End: Complemental strand, 9471288 - 9470993
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    ||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9471288 tactaaacttagttgacagtgaggaaaggaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 9471189  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtcnnnnnnnt 437  Q
    |||||||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||             
T  9471188 aggagaacaagagtcaagaaacaatgatgaaacatgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcggtaaaaaaata 9471089  T
Q  438 a-aattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgt 532  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  9471088 ataattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacataattatttggactgt 9470993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 17921151 - 17920992
Alignment:
Q  246 tgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcataggagaac 345  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  17921151 tgagttgacagtgaggaaaagaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaaacataacatttttaacattataggagaac 17921052  T
Q  346 aagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcatttta 405  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  17921051 aagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcatttta 17920992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 9471515 - 9471336
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttacc 111  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||     
T  9471515 aagagaataacaattatccatactaagatagtaacattaacataattgtacactaaaaaagtatatttattaaattcatttgctaatcagtatagttact 9471416  T
Q  112 atatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattag 191  Q
    ||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9471415 atatataatttttttagggaacatcatagtcactatattgtcttgcaagatccacatatatgatataattaattaattag 9471336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 39 - 201
Target Start/End: Complemental strand, 17921358 - 17921196
Alignment:
Q  39 catagtaacattaacataattgtacactaaaatatatatttattaaatttatttgctaatcagtatagttaccatatataannnnnnnagggaacaacat 138  Q
    |||||||||||||||| |||||||||||||||  ||||||||||||||| |||||||||||||||||||||| ||||||||       ||||||||||||    
T  17921358 catagtaacattaacacaattgtacactaaaaagtatatttattaaattcatttgctaatcagtatagttactatatataatttttgtagggaacaacat 17921259  T
Q  139 agtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  17921258 agtcaatatattgtcttggaagatccacatatatgatataattaattaattagccaatacatg 17921196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 472 - 557
Target Start/End: Complemental strand, 17920993 - 17920908
Alignment:
Q  472 tatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtccttctagtatagtgtaaaaaataa 557  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| | |||||||  ||||| || |||  ||||||||||||||    
T  17920993 tatacaatatttagaagtgagaatgacttaaataccaaatgaacataactatttggattgtccgtccagtccagtgtaaaaaataa 17920908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 604 - 694
Target Start/End: Complemental strand, 9470939 - 9470844
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa-----tcgagcagctatttatcgacccagaccctacattttattcg 694  Q
    |||||| ||||  ||||||| ||||||||||||||||||||| |||||||     ||| || ||||||||||| |||| |||||||||||||||||    
T  9470939 tagcccgaacgtgcttcgggatttttcgggccgggctaaaaagccctgaaaaaattcgggctgctatttatcggcccaaaccctacattttattcg 9470844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 581 - 651
Target Start/End: Original strand, 15614124 - 15614194
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccctg 651  Q
    |||||||| | |||||||||| ||||||||||| | || |||||||||||||| ||||||||||| |||||    
T  15614124 ggctgcccgtggcccgaacgggctagccctaacaggctccgggctttttcggggcgggctaaaaagccctg 15614194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 693
Target Start/End: Complemental strand, 17920893 - 17920808
Alignment:
Q  613 cggacttcgggctttttcgggccgggctaaaaatccctgaa-----tcgagcagctatttatcgacccagaccctacattttattc 693  Q
    |||||| |||||||||||||||||||||||||| |||| ||     ||  || ||||||||||| |||| ||||||||||||||||    
T  17920893 cggactgcgggctttttcgggccgggctaaaaagccctaaaaaaattcaggctgctatttatcggcccaaaccctacattttattc 17920808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 611 - 653
Target Start/End: Original strand, 20922765 - 20922807
Alignment:
Q  611 aacggacttcgggctttttcgggccgggctaaaaatccctgaa 653  Q
    ||||| || |||||||||||||||||||||||||| |||||||    
T  20922765 aacgggctacgggctttttcgggccgggctaaaaagccctgaa 20922807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 215; Significance: 1e-117; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 238 - 557
Target Start/End: Original strand, 12076290 - 12076607
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  12076290 tactaaactaagttgacagtgaggaaaggaaatcacaatgcaaccagaagcaaaagggtttcaaaagcggggaataaatgcataacatttttaacatcat 12076389  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggtcnnnnnnnt 437  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||             
T  12076390 aggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcggt--aaaaaaa 12076487  T
Q  438 aaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtccttc 537  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||||| ||    
T  12076488 aaattaaaagtaacaaaacaaatgaacataattatatacaatttttagaagagcaaatgacttaaataccaaatgaacataattatttgggttgtccgtc 12076587  T
Q  538 tagtatagtgtaaaaaataa 557  Q
     |||  ||||||||||||||    
T  12076588 cagtccagtgtaaaaaataa 12076607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 243 - 555
Target Start/End: Original strand, 12271866 - 12272180
Alignment:
Q  243 aactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcataggag 342  Q
    |||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12271866 aactgagttgacagtgaggaaaggaaatcattatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcataggag 12271965  T
Q  343 aacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaatttcggt--cnnnnnnntaaa 440  Q
    |||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||           |||    
T  12271966 aacaagagttaagaaacaatgatgaaacatgaccactttgatttttgtttttccttcattttaattagaagtaacaaaatttcggtaaaaaaaaataaaa 12272065  T
Q  441 ttagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtccttctag 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||| || ||    
T  12272066 ttagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacaaaattatttggactgtccgtccag 12272165  T
Q  541 tatagtgtaaaaaat 555  Q
    |  ||||||||||||    
T  12272166 tccagtgtaaaaaat 12272180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 12076071 - 12076253
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaatatatatttattaaatttatttgctaatcagtatagttacca 112  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||||||||||||||| |    
T  12076071 aagagaataacaattatacatactaacatagtaacattaacataattgaacaag------tatatttattaaatttatttgctaatcagtatagttacta 12076164  T
Q  113 tatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12076165 tatataatttttttagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 12076253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 12271636 - 12271825
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttacc 111  Q
    |||| ||||||||||||||||||||| ||| |||||||||||||||||||||| |||| | ||||||||||||||| |||||||||| |||||||||||     
T  12271636 aagagaataacaattatccatactaagataataacattaacataattgtacacgaaaaaagtatatttattaaattcatttgctaattagtatagttact 12271735  T
Q  112 atatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    ||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12271736 atatataatttttttagggaacaaaatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaaaacatg 12271825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 604 - 653
Target Start/End: Original strand, 12076634 - 12076683
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa 653  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  12076634 tagccctaacggacttcgggctttttcgggccgggttaaaaagccctgaa 12076683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 653
Target Start/End: Original strand, 17869232 - 17869304
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa 653  Q
    ||||||||||||||||| ||| | ||||| || ||  | |||||||||||||||||||||||||| |||||||    
T  17869232 ggctgcccttagcccgagcgggccagcccaaatgggttgcgggctttttcgggccgggctaaaaaaccctgaa 17869304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 576 - 650
Target Start/End: Original strand, 31472452 - 31472526
Alignment:
Q  576 tgccaggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccct 650  Q
    |||| |||||||| | |||||||||| |||||| |||||| || | |||||||||||||| ||||||||| ||||    
T  31472452 tgccgggctgcccgtggcccgaacgggctagccataacgggctcctggctttttcgggcctggctaaaaagccct 31472526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 606 - 651
Target Start/End: Complemental strand, 20139327 - 20139282
Alignment:
Q  606 gccctaacggacttcgggctttttcgggccgggctaaaaatccctg 651  Q
    |||| ||||| || |||||||||||||||||||||||||| |||||    
T  20139327 gcccgaacgggctccgggctttttcgggccgggctaaaaagccctg 20139282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 606 - 651
Target Start/End: Original strand, 22193542 - 22193587
Alignment:
Q  606 gccctaacggacttcgggctttttcgggccgggctaaaaatccctg 651  Q
    |||| ||||| || |||||||||||||||||||||||||| |||||    
T  22193542 gcccgaacgggctccgggctttttcgggccgggctaaaaagccctg 22193587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-116; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 238 - 557
Target Start/End: Original strand, 50737586 - 50737909
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    |||||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50737586 tactaaactgagttaacagtgaggaaaggaaatcacaatgcaaccataaacaaaagggtttcataagtggggaataaaagcataacatttttaacatcat 50737685  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaat---taaaagtaacaaaatttcggtc-nnnn 433  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    | |||||||||||||||||||         
T  50737686 aggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaatcagaagaagtaacaaaatttcggtcaaaaa 50737785  T
Q  434 nnntaaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtc 533  Q
       ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50737786 aaataaattagaagtaacaaaacatatgaacataagtatatacaatttttagaagagagaatgacttaaataccaaatgaacataattatttgggctgtc 50737885  T
Q  534 cttctagtatagtgtaaaaaataa 557  Q
    | || |||   |||||||||||||    
T  50737886 cgtccagtcccgtgtaaaaaataa 50737909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 238 - 557
Target Start/End: Complemental strand, 50775269 - 50774946
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    |||||||||||||| |||| ||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50775269 tactaaactgagttaacagtgaggaaaggaaatcacaatgcaaccataaacaaaagggtttcataagtggggaataaaagcataacatttttaacatcat 50775170  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaat---taaaagtaacaaaatttcggtc-nnnn 433  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    | |||||||||||||||||||         
T  50775169 aggagaacaagagttaagaaacaatgatgaaacacgaccactttgatttttgtttttccttcattttaatcagaagaagtaacaaaatttcggtcaaaaa 50775070  T
Q  434 nnntaaattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtc 533  Q
       ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50775069 aaataaattagaagtaacaaaacatatgaacataagtatatacaatttttagaagagagaatgacttaaataccaaatgaacataattatttgggctgtc 50774970  T
Q  534 cttctagtatagtgtaaaaaataa 557  Q
    | || |||   |||||||||||||    
T  50774969 cgtccagtcccgtgtaaaaaataa 50774946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 50737358 - 50737549
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacact-aaaatatatatttattaaatttatttgctaatcagtatagttac- 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||||||     
T  50737358 aagagaataacaattatccatactaacatagtaacattaacataattgtacactaaaaaaatatatttattaaattcatttgctaatctgtatagttact 50737457  T
Q  111 -catatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
      ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  50737458 atatatataatttttttagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagctaatacatg 50737549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 50775497 - 50775306
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacact-aaaatatatatttattaaatttatttgctaatcagtatagttac- 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||||||     
T  50775497 aagagaataacaattatccatactaacatagtaacattaacataattgtacactaaaaaaatatatttattaaattcatttgctaatctgtatagttact 50775398  T
Q  111 -catatataannnnnnnagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
      ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  50775397 atatatataatttttttagggaacaacatagtcactatattgtcttgcaagatccacatatatgatataattaattaattagctaatacatg 50775306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 238 - 421
Target Start/End: Original strand, 26844183 - 26844365
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    |||||||||||||||| || || |||| ||||| |||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||| || |     
T  26844183 tactaaactgagttgagagtgaagaaaggaaataacaatgtaactataagcaaaagggttttaaaagtggggaataaaagcataacatttttaatattac 26844282  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaa 421  Q
    ||||||||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  26844283 aggagaacaagagttaagaaacaatgatg-aacacgatcactttgatttttgtttttccttcattttaattagaagtaacaaaa 26844365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 439 - 557
Target Start/End: Original strand, 26844349 - 26844467
Alignment:
Q  439 aattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtccttct 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| ||     
T  26844349 aattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacataactatttgggttgtccgtcc 26844448  T
Q  539 agtatagtgtaaaaaataa 557  Q
    ||| |||||| ||||||||    
T  26844449 agtctagtgtcaaaaataa 26844467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 604 - 694
Target Start/End: Original strand, 50737934 - 50738029
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa-----tcgagcagctatttatcgacccagaccctacattttattcg 694  Q
    |||||||||||  ||||||||||||||||||||||||||||| |||||||     |||  | ||||||||||| ||||| ||||||||||||||||    
T  50737934 tagccctaacgagcttcgggctttttcgggccgggctaaaaaaccctgaaaaaattcggactgctatttatcggcccaggccctacattttattcg 50738029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 604 - 694
Target Start/End: Complemental strand, 50774920 - 50774825
Alignment:
Q  604 tagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa-----tcgagcagctatttatcgacccagaccctacattttattcg 694  Q
    |||||||||||  ||||||||||||||||||||||||||||| |||||||     |||  | ||||||||||| ||||| ||||||||||||||||    
T  50774920 tagccctaacgagcttcgggctttttcgggccgggctaaaaaaccctgaaaaaattcggactgctatttatcggcccaggccctacattttattcg 50774825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 581 - 650
Target Start/End: Complemental strand, 21389881 - 21389812
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccct 650  Q
    |||| ||| ||||||| |||| ||||||||||||| |||||||||||| ||||| |||| ||||| ||||    
T  21389881 ggctacccgtagcccgcacgggctagccctaacgggcttcgggcttttacgggctgggccaaaaaaccct 21389812  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 645
Target Start/End: Original strand, 42854272 - 42854325
Alignment:
Q  592 gcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaa 645  Q
    |||||||||| |||| ||||||||||| ||||||||||  ||||||||||||||    
T  42854272 gcccgaacgggctagtcctaacggactccgggcttttttaggccgggctaaaaa 42854325  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 606 - 651
Target Start/End: Complemental strand, 21392738 - 21392693
Alignment:
Q  606 gccctaacggacttcgggctttttcgggccgggctaaaaatccctg 651  Q
    |||||||||| ||||||||||| ||||||||||| ||||| |||||    
T  21392738 gccctaacgggcttcgggctttatcgggccgggccaaaaagccctg 21392693  T

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Target: chr4 (Bit Score: 148; Significance: 1e-77; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 238 - 421
Target Start/End: Complemental strand, 16030140 - 16029958
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  16030140 tactaaactgagttgacagtgaggaaaggaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacattat 16030041  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaa 421  Q
    ||||||||||||||||||||||||||| | |||||||||||||  ||||||||||||||||||||||||||| |||||||||||    
T  16030040 aggagaacaagagttaagaaacaatgatg-aacacgaccacttcgatttttgtttttccttcattttaattagaagtaacaaaa 16029958  T

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Target: chr4; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 238 - 421
Target Start/End: Complemental strand, 50005170 - 50004987
Alignment:
Q  238 tactaaactgagttgacagcgaggaaatgaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacatcat 337  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  50005170 tactaaactgagttgacagtgaagaaaggaaatcacaatgcaaccataagcaaaagggtttcaaaagtggggaataaaagcataacatttttaacattac 50005071  T
Q  338 aggagaacaagagttaagaaacaatgaggaaacacgaccactttaatttttgtttttccttcattttaattaaaagtaacaaaa 421  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||||||||||||||||| |||||||||||    
T  50005070 aggagaacaagagttaagaaacaatgatgaaacacaaccactttgattattgtttttccttcattttaattagaagtaacaaaa 50004987  T

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Target: chr4; HSP #3
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 439 - 557
Target Start/End: Complemental strand, 50005003 - 50004885
Alignment:
Q  439 aattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtccttct 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||||||| ||     
T  50005003 aattagaagtaacaaaacaaatgaacataattatatacaatttttaaaagagagaatgacttaaatatcaaatgaacataactatttgggctgtccgtcc 50004904  T
Q  539 agtatagtgtaaaaaataa 557  Q
    |||  ||||| ||||||||    
T  50004903 agtccagtgtcaaaaataa 50004885  T

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Target: chr4; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 439 - 554
Target Start/End: Complemental strand, 16029974 - 16029859
Alignment:
Q  439 aattagaagtaacaaaacaaatgaacataattatatacaatttttagaagagagaatgacttaaataccaaatgaacatgattatttgggctgtccttct 538  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||  |     
T  16029974 aattagaagtaacaaaacaaatgaacataattatatataatttttagaagagagaatgacttaaatacctaatgaacataactatttgggttgtccgccc 16029875  T
Q  539 agtatagtgtaaaaaa 554  Q
    ||| ||||||||||||    
T  16029874 agtctagtgtaaaaaa 16029859  T

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Target: chr4; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 16030332 - 16030229
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagttacc 111  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| ||||||||     
T  16030332 aagaaaataacaattatccataccaacatagtaacattaacataattgtacactaaaaaagtatatttattaaattcatttgctaatcagcatagttact 16030233  T
Q  112 atat 115  Q
    ||||    
T  16030232 atat 16030229  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 16030242 - 16030177
Alignment:
Q  136 catagtcactatattgtcttgcaagatccacatatatgatataattaattaattagccaacacatg 201  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  16030242 catagttactatattgtcttccaagatccacatatataatataattaattaattagccaacacatg 16030177  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 50005389 - 50005298
Alignment:
Q  13 aagaaaataacaattatccatactaacatagtaacattaacataattgtacactaaaata-tatatttattaaatttatttgctaatcagtatagt 107  Q
    |||| ||||||| |||||||||| |||    ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||    
T  50005389 aagagaataacatttatccataccaac----taacattaacataattgtacactaaaaaagtatatttattaaattcatttgctaatcagtatagt 50005298  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 581 - 651
Target Start/End: Complemental strand, 32767720 - 32767650
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccctg 651  Q
    |||||||| | |||||||||| |||||| ||||||  | |||||||||||||||||||||||||| |||||    
T  32767720 ggctgcccgtggcccgaacgggctagccttaacgggttccgggctttttcgggccgggctaaaaagccctg 32767650  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 576 - 651
Target Start/End: Complemental strand, 44341337 - 44341262
Alignment:
Q  576 tgccaggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccctg 651  Q
    |||| ||||||||||||||| ||||| ||||||| || ||  | ||||||||| |||||||||||||||| |||||    
T  44341337 tgccgggctgcccttagcccaaacgggctagcccgaaagggttacgggcttttacgggccgggctaaaaagccctg 44341262  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 50005266 - 50005232
Alignment:
Q  137 atagtcactatattgtcttgcaagatccacatata 171  Q
    |||||||||||||||||||||||||||||||||||    
T  50005266 atagtcactatattgtcttgcaagatccacatata 50005232  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 651
Target Start/End: Original strand, 43286255 - 43286300
Alignment:
Q  606 gccctaacggacttcgggctttttcgggccgggctaaaaatccctg 651  Q
    |||||||||| || |||||||||||||||||||||||||| |||||    
T  43286255 gccctaacgggctccgggctttttcgggccgggctaaaaagccctg 43286300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 581 - 653
Target Start/End: Original strand, 9455305 - 9455377
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa 653  Q
    |||||||| |||||||||| | | ||||||||||| || ||| ||||||||||||  |||||||| |||||||    
T  9455305 ggctgcccgtagcccgaactggccagccctaacgggctacggcctttttcgggcccagctaaaaagccctgaa 9455377  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 605 - 653
Target Start/End: Original strand, 34859052 - 34859100
Alignment:
Q  605 agccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa 653  Q
    ||||||||||| || |||||||||| ||||||||||||||| |||||||    
T  34859052 agccctaacgggctacgggcttttttgggccgggctaaaaagccctgaa 34859100  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 581 - 653
Target Start/End: Complemental strand, 15243911 - 15243839
Alignment:
Q  581 ggctgcccttagcccgaacggactagccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa 653  Q
    ||||||||||||||||  ||| ||||||| ||||| || ||||||||  ||| |||||||||||| |||||||    
T  15243911 ggctgcccttagcccgtgcgggctagcccaaacgggctacgggctttaacggtccgggctaaaaagccctgaa 15243839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 605 - 653
Target Start/End: Complemental strand, 28968307 - 28968259
Alignment:
Q  605 agccctaacggacttcgggctttttcgggccgggctaaaaatccctgaa 653  Q
    ||||||||||| || |||||||||| ||||||||||||||| |||||||    
T  28968307 agccctaacgggctacgggcttttttgggccgggctaaaaagccctgaa 28968259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 611 - 694
Target Start/End: Complemental strand, 2349800 - 2349713
Alignment:
Q  611 aacggacttcgggctttttcgggccgggctaaaaatccctgaa----tcgagcagctatttatcgacccagaccctacattttattcg 694  Q
    ||||| || |||||||||| ||||||||||||||| |||||||    |||||| || |||  ||| ||||| ||||||||||||||||    
T  2349800 aacgggctacgggcttttttgggccgggctaaaaagccctgaaaaattcgagctgcaattattcggcccaggccctacattttattcg 2349713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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