View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_22 (Length: 422)
Name: NF17615_low_22
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Complemental strand, 17400904 - 17400520
Alignment:
| Q |
15 |
aatattactaaaaacaccaacaaagaattcatctatcatcattcaagtacacccacctaatcaacacaaactcaaataaaggagaaaaccaccaccatag |
114 |
Q |
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| T |
17400904 |
aatattactaaaaacaccaacaaagaattcatctatcatcattcaagtacacccacctaatcaacacaaactcaaataaaggagaaaaccaccaccatag |
17400805 |
T |
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| Q |
115 |
atatagctaagaattttgacgggataagtatcatccattcatatcatccaaaacagtaaaagtatccaaccataaccataaatattaaaatataaagaaa |
214 |
Q |
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| T |
17400804 |
atatagctaagaattttgaagggataagtatcatccattcatatcatccaaa-cagtaaaagtatccaaccataaccataaatattaaaatataaagaaa |
17400706 |
T |
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| Q |
215 |
tgtactctttcatactaaaagaaaatactccatgagtttagtgtcaccttaacaataggtgatttattactaaaaatcacagtaacttatccttttgata |
314 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17400705 |
tgtactttttcaaactaaaagaaaatactccatgagtttagtgtcaccttaacaataggtgatttattactaaaaatcacagtaacttatccttttgata |
17400606 |
T |
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| Q |
315 |
tctcttgcttacgagtcaaaatagtgaagcaagttattgtgagattctgcaaggaactcttccgcgcgaattctcattttttcagc |
400 |
Q |
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| T |
17400605 |
tctcttgcttaagagtcaaaatagtgaagcaagttattgtgagattctgcaaggaactcttccgcgcgaattctcattttttcagc |
17400520 |
T |
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