View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17615_low_29 (Length: 370)
Name: NF17615_low_29
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 35109371 - 35109708
Alignment:
| Q |
16 |
atccaagagtaatttgctaaaattacctcactgcataggagtatctatctattctgcaccacaaattccttcaattcataagccttgcctccatatattt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
35109371 |
atccaagagtaatttgctaaaattacctcactgcataggagtatctatctattcttcaccacaaattccttcaattcataagccttgcttccgtatattt |
35109470 |
T |
|
| Q |
116 |
tactttgtaatnnnnnnn-tacaatatcatgcattttactaggaaaattgttaattgactctttaggtagttcatattaatgaattgcaatttttgacaa |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35109471 |
tactttgtaaaaaaaaaaatacaatatcatgcattttactaggaaaattgttaattgactctttaggtagttcatattaatgaattgcaatttttgacaa |
35109570 |
T |
|
| Q |
215 |
cctgcagaaaggaatacgttatggcaaatcaatcatctgagctagccattgaacaactgaagaagcttctcaggttaattacttttctaacaagaaataa |
314 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35109571 |
cctgcagaaaggaata-gttatggcaaatcaatcatctgagctagccattgaacaactgaagaagcttctcaggttgattacttttctaacaagaaataa |
35109669 |
T |
|
| Q |
315 |
aaatgcacacataattcaatttaatgatacataaattat |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35109670 |
aaatgcacacataattcaatttaatgatacataaattat |
35109708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 197 - 353
Target Start/End: Original strand, 35096178 - 35096333
Alignment:
| Q |
197 |
aattgcaatttttgacaacctgcagaaaggaatacgttatggcaaatcaatcatctgagctagccattgaacaactgaagaagcttctcaggttaattac |
296 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35096178 |
aattacaatttttgacaacctgcagaaagggataact-atggcaaatcaatcatctgagctagccattgaacaactgaagaagcttctcaggttaattac |
35096276 |
T |
|
| Q |
297 |
ttttctaacaagaaataaaaatgcacacataattcaatttaatgatacataaattat |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35096277 |
ttttctaacaagaaataaaaatgcacacataattcaatttaatgatacataaattat |
35096333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University