View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17615_low_3 (Length: 776)
Name: NF17615_low_3
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 5 - 758
Target Start/End: Original strand, 28730008 - 28730765
Alignment:
| Q |
5 |
caaaagtcataagcctgtgaaaacagatacttccccaaagactaaat----catacacaaattgtaagaaaccatgaattgatacatcatacacaagata |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28730008 |
caaaattcataagcctgtgaaaacagatacttccccaaagactaaataaatcatacacaaattgtaagaaaccatgaattgatacatcatacacaagata |
28730107 |
T |
|
| Q |
101 |
atctctcaagaaaatctgtaaagactaaatccacaaattgttttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaactaact |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
28730108 |
atctc--aagaaaatctgtaaagactaaatccaca-------ttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaattaact |
28730198 |
T |
|
| Q |
201 |
acaaattcagagttacaattcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgt |
300 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28730199 |
acaaattcagagtttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacggtgt |
28730298 |
T |
|
| Q |
301 |
aaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggccatgg |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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|
| T |
28730299 |
aaacttattaactacaaatttcatatagttttacttcagcagagaaagaagtaaatcgcaatcttcgtcatgatcaaaccatcacactcacaggccatgg |
28730398 |
T |
|
| Q |
401 |
tgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgctcatcaagagcag |
500 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
28730399 |
tgatcttcaatctcaaacattggcctgacctgaggcatgggagacacacctgttgcagcagtgacatcagcagcacagccaccacgcccatcaagagcag |
28730498 |
T |
|
| Q |
501 |
agcaggtttcttccgtcgcctgaccagcagaatctgaaacagtagcagctctggctccgacacctgctccttccgatg---------ctcctaagatagt |
591 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
28730499 |
agcaggtttcttcagtcgcctgaccagcagaatctgatacagtagcagctctggctccgacacctgctccttccgatgctccttcacctcctaagatagt |
28730598 |
T |
|
| Q |
592 |
atcataagcagccccaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaacttcacccta |
691 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
28730599 |
atcataagcatccgcaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaccttcacccta |
28730698 |
T |
|
| Q |
692 |
acatagttaattctcatcggtgctaatgtcactcctccaccagaagtagtgatcagaagcggctgac |
758 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
28730699 |
acatagttaatcctcatcggtgctaatgtcactcctccaccggaagtagtgatcagaagcggctgac |
28730765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 33078592 - 33078556
Alignment:
| Q |
287 |
atgaacaacagtgtaaacttattaacgacaaatttca |
323 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
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|
| T |
33078592 |
atgaacaacagtgtaaacttattaactacaaatttca |
33078556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 106 - 758
Target Start/End: Original strand, 38120529 - 38121191
Alignment:
| Q |
106 |
tcaagaaaatctgtaaagactaaatccacaaattgttttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaactaactacaaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||| | ||||||||||||||| |||||||||| |
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|
| T |
38120529 |
tcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatagtgtagtt--ggataatagtgtgaattaactacaaa |
38120626 |
T |
|
| Q |
206 |
ttcagagttacaattcatgagacaaagaagtgcagcacaaactaaaaagaactaagcaacggtgtgaattagctacattagatgaacaacagtgtaaact |
305 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
38120627 |
ttcaaagtttcacttcatgagacaaagaagtgcagcacaaactaaaaagaactaaggaaccgtgtgaattagctacattagatggacaacagtgtaaact |
38120726 |
T |
|
| Q |
306 |
tattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcat---catcgaaccatcacactcacaggccatggtg |
402 |
Q |
| |
|
||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| |||| ||||||| |||| |||||||||||||||||| |
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|
| T |
38120727 |
tattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcatcgaagcatcgcactcacaggccatggtg |
38120826 |
T |
|
| Q |
403 |
atcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgctcatcaagagcagag |
502 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
38120827 |
atcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgcagtagtgacatcagcagcacaaccaccacgtccatcaggagcagag |
38120926 |
T |
|
| Q |
503 |
caggtttcttccgtcgcctgaccagcagaatctgaaacagtagcagctctggctccgacacctgctccttccgatg---------ctcctaagatagtat |
593 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
38120927 |
caggtttcttccgtggcctgaccagcagaatctgatacagtagcagctctggctccgacacccgctccttccgatgctccttcacctcctaagatagtat |
38121026 |
T |
|
| Q |
594 |
cataagcagccccaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaacttcaccctaac |
693 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||| ||| || || || |
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|
| T |
38121027 |
cataagcagccgcaataggattgatatgcggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcac |
38121126 |
T |
|
| Q |
694 |
atagttaattctcatcggtgctaatgtcactcctccaccagaagtagtgatcagaagcggctgac |
758 |
Q |
| |
|
||||||||| |||||||| ||| ||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
38121127 |
atagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgac |
38121191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 298 - 758
Target Start/End: Complemental strand, 38609401 - 38608932
Alignment:
| Q |
298 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
397 |
Q |
| |
|
||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
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|
| T |
38609401 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38609302 |
T |
|
| Q |
398 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgctcatcaagag |
497 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| || || ||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
38609301 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagag |
38609202 |
T |
|
| Q |
498 |
cagagcaggtttcttccgtcgcctgaccagcagaatctgaaacagtagcagctctggctccgacacctgctccttccgatg---------ctcctaagat |
588 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| | | ||| | |||| |||||| ||||||||||||||||| | ||||||| || |
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|
| T |
38609201 |
cagagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatat |
38609102 |
T |
|
| Q |
589 |
agtatcataagcagccccaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaacttcacc |
688 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| || |
|
|
| T |
38609101 |
agtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaact |
38609002 |
T |
|
| Q |
689 |
ctaacatagttaattctcatcggtgctaatgtcactcctccaccagaagtagtgatcagaagcggctgac |
758 |
Q |
| |
|
|| ||||||||||| |||||||| ||| ||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
38609001 |
ctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgac |
38608932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 298 - 758
Target Start/End: Complemental strand, 38794184 - 38793715
Alignment:
| Q |
298 |
tgtaaacttattaacgacaaatttcatatagttttacttcagcagagaatgaagtaaatcgcaatcttcgtcatcatcgaaccatcacactcacaggcca |
397 |
Q |
| |
|
||||||||||||||| |||||||||||| || || |||||||||||||| ||| |||| |||||||||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
38794184 |
tgtaaacttattaactacaaatttcatagagattcacttcagcagagaaagaactaaaccgcaatcttcatcatcatcgaagcatcgcactcacaggcca |
38794085 |
T |
|
| Q |
398 |
tggtgatcttcaatctcaatcattggcctgacctgaggcataggagacacacctgttgcagcagtgacatcagcagcacaaccaccacgctcatcaagag |
497 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| || || ||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
38794084 |
tggtgatcttcaatctcaaccattggcttgacctgaggcatgggagacacacctgctgtagtagtgacaccagcagcacaaccaccacgtccatcaagag |
38793985 |
T |
|
| Q |
498 |
cagagcaggtttcttccgtcgcctgaccagcagaatctgaaacagtagcagctctggctccgacacctgctccttccgatg---------ctcctaagat |
588 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| | | ||| | |||| |||||| ||||||||||||||||| | ||||||| || |
|
|
| T |
38793984 |
cagagcaggtttcttccgtcgcctgacctggagaatctaataaagttgatgctccggctccaacacctgctccttccgacgctccttcacctcctaatat |
38793885 |
T |
|
| Q |
589 |
agtatcataagcagccccaataggattgatatgcggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaacttcacc |
688 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||| || |
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|
| T |
38793884 |
agtatcataagcagccgcaataggattgatatgcggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaact |
38793785 |
T |
|
| Q |
689 |
ctaacatagttaattctcatcggtgctaatgtcactcctccaccagaagtagtgatcagaagcggctgac |
758 |
Q |
| |
|
|| ||||||||||| |||||||| ||| ||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
38793784 |
ctcacatagttaatcctcatcggcgctgatgtcactcctccgccggaagtagtgatcagaagcggctgac |
38793715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 343 - 452
Target Start/End: Complemental strand, 34592957 - 34592845
Alignment:
| Q |
343 |
agaatgaagtaaatcgcaatcttcgtcatcatc---gaaccatcacactcacaggccatggtgatcttcaatctcaatcattggcctgacctgaggcata |
439 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
34592957 |
agaaagaagtaaaccgcaatcttcatcatcatcattgaagcatcacactcacaggccatggtgatcttcaatctcaaccattggcctgacccgaggcacg |
34592858 |
T |
|
| Q |
440 |
ggagacacacctg |
452 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34592857 |
ggagacacacctg |
34592845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 3928106 - 3928143
Alignment:
| Q |
228 |
caaagaagtgcagcacaaactaaaaagaactaagcaac |
265 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
3928106 |
caaagaagtgctgcacaaactaaaaagatctaagcaac |
3928143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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