View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_30 (Length: 370)
Name: NF17615_low_30
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 41030236 - 41030575
Alignment:
| Q |
10 |
attattctccctgcctctcatacaacactgcaactattttgtttattcttcacaaattccatggcctctgtttgcatatccaattctgttaataacaaaa |
109 |
Q |
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| T |
41030236 |
attattctccctgcctctcatacaacactgcaactattttgtttattcttcacaaattccatggcctctgtttgcatatccaattctgttaataacaaaa |
41030335 |
T |
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| Q |
110 |
ttattccgattagaccaaccttcacaaacctctacaagtggccagaatcagaagtagaatttgtgaagactatgaactcaaacaattatcgtgacagagt |
209 |
Q |
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| T |
41030336 |
ttattccgattagaccaaacttcacaaacctctacaagtggccagaatcagaagtagaatttgtgaagactatgaactcaaacaattatcgtgacagagt |
41030435 |
T |
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| Q |
210 |
tgaagttgatagcctctcctgcaggcaagtgtacctgaggagctacaaattctccaggaagaaattgagtgtaaccgagaagaccataaaatatttcagc |
309 |
Q |
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| T |
41030436 |
tgaagttgatagcctctcctgcaggcaagtgtacctgaggagctacaaattctccaggaagaaattgagtgtaaccgagaagaccataaaatatttcagc |
41030535 |
T |
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| Q |
310 |
agtgtaaaagagagtgtgatttgtgctagcaatatattat |
349 |
Q |
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| T |
41030536 |
agtttaaaagagagtgtgatttgtgctagcaatatattat |
41030575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 57 - 348
Target Start/End: Original strand, 41035879 - 41036176
Alignment:
| Q |
57 |
cttcacaaattccatggcctctgtttgcatatccaattctgttaataacaa-aat--tattccgattagaccaaccttcacaaacctctacaagtggcca |
153 |
Q |
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| T |
41035879 |
cttcacaagttccatggcttctgtttgcatatccaattctgtcaataccaacaatggtattccaattaggccaaccttcgtaaacctctataaatggcct |
41035978 |
T |
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| Q |
154 |
gaat---cagaagtagaatttgtgaagactatgaactcaaacaattatcgtgacagagttgaagttgatagcctctcctgcaggcaagtgtacctgagga |
250 |
Q |
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| T |
41035979 |
gaataatcagacgtagaatttgtgaagactatgaactgtaaaaattatcgtgatggagctgaagttgatagtctctcttgcaggcaaatgtatttcagga |
41036078 |
T |
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| Q |
251 |
gctacaaattctccaggaagaaattgagtgtaaccgagaagaccataaaatatttcagcagtgtaaaagagagtgtgatttgtgctagcaatatatta |
348 |
Q |
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| T |
41036079 |
gctacaaattctcaaggaagaaattaagtatcactgggaagagcataaaatgtttcagaagtgtaaaggagggtgtggtttgtgccagcaatagatta |
41036176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 269
Target Start/End: Complemental strand, 40637036 - 40636839
Alignment:
| Q |
69 |
catggcctctgtttgcatatccaattctgttaataacaaaattattccgattagaccaaccttcacaaacctctacaagtggccagaatcagaagtagaa |
168 |
Q |
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|||||| ||| |||| ||||||||| ||| || ||| ||| |||| | ||| | ||||||||| ||||| | ||||| | ||| ||| ||| ||||| |
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| T |
40637036 |
catggcttctatttgtgtatccaattgtgtcaacaaccaaagtatttccattcggccaaccttcgcaaacatatacaaatcaccaacatctgaaatagaa |
40636937 |
T |
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| Q |
169 |
tttgtgaagactatgaactcaaacaattatcgtgacagagttgaagttgatagcctctcctgcaggcaagtgtacctgaggagctacaaattctccagga |
268 |
Q |
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| T |
40636936 |
tttgtgaagacta--aactctaacgattatcataaaggagttgaaattgatggcctct-ttgcaggcaaatgtatttgaggagctaaatattctcaagga |
40636840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 29016349 - 29016378
Alignment:
| Q |
132 |
cacaaacctctacaagtggccagaatcaga |
161 |
Q |
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| T |
29016349 |
cacaaacctctacaagtggccagaatcaga |
29016378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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