View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_32 (Length: 363)
Name: NF17615_low_32
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_32 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 37901982 - 37901631
Alignment:
| Q |
12 |
ccaagaatatagagattccaaatattaaatgggatgtctttgagttgatgatgaggtattttggcagtctcccttttataacattttgacgtttctataa |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37901982 |
ccaaaaatatagagattccaaatattaaatgggatgtctttgagttgatgatgaggtattttggcagtctcccttttataacattttgacgtttctataa |
37901883 |
T |
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| Q |
112 |
tagggctctatatttgaactgattttctgttgaaattttagatatatatacactggagcagtagatattgatttggatcttgctccggacctccttaaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37901882 |
tagggctctatatttgaactgattttctgttgaaattttagatatatatacactggagcagtagatattgatttggatcttgctccggacctccttaaag |
37901783 |
T |
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| Q |
212 |
ctgcagatcaatatcttcttgatggtcttaagagtctttgcgaatatgctatttctgaggtaggccacaacttgagtttcagttgcttttatttttgttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37901782 |
ctgcagatcaatatcttcttgatggtcttaagagtctttgcgaatatgctatttctgaggtaggccacaacttgagtttcagttgcttttatttttgttg |
37901683 |
T |
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| Q |
312 |
aatttttaatggtttaatttaatactgttaaattattcttgtaggatatttc |
363 |
Q |
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| T |
37901682 |
aatttttaatggtttaatttaatactgttaaattattcttgtaggatatttc |
37901631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 37908493 - 37908142
Alignment:
| Q |
12 |
ccaagaatatagagattccaaatattaaatgggatgtctttgagttgatgatgaggtattttggcagtctcccttttataacattttgacgtttctataa |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37908493 |
ccaaaaatatagagattccaaatattaaatgggatgtctttgagttgatgatgaggtattttggcagtctcccttttataacattttgacgtttctataa |
37908394 |
T |
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| Q |
112 |
tagggctctatatttgaactgattttctgttgaaattttagatatatatacactggagcagtagatattgatttggatcttgctccggacctccttaaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37908393 |
tagggctctatatttgaactgattttctgttgaaattttagatatatatacactggagcagtagatattgatttggatcttgctccggacctccttaaag |
37908294 |
T |
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| Q |
212 |
ctgcagatcaatatcttcttgatggtcttaagagtctttgcgaatatgctatttctgaggtaggccacaacttgagtttcagttgcttttatttttgttg |
311 |
Q |
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| T |
37908293 |
ctgcagatcaatatcttcttgatggtcttaagagtctttgcgaatatgctatttctgaggtaggccacaacttgagtttcagttgcttttatttttgttg |
37908194 |
T |
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| Q |
312 |
aatttttaatggtttaatttaatactgttaaattattcttgtaggatatttc |
363 |
Q |
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| T |
37908193 |
aatttttaatggtttaatttaatactgttaaattattcttgtaggatatttc |
37908142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 47276861 - 47276909
Alignment:
| Q |
20 |
atagagattccaaatattaaatgggatgtctttgagttgatgatgaggt |
68 |
Q |
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| T |
47276861 |
atagagatcccaaatattagatgggaagtttttgagttgatgatgaggt |
47276909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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