View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_low_37 (Length: 334)

Name: NF17615_low_37
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_low_37
NF17615_low_37
[»] chr5 (1 HSPs)
chr5 (2-316)||(18556982-18557313)
[»] chr6 (2 HSPs)
chr6 (2-144)||(24494868-24495010)
chr6 (228-317)||(12128584-12128673)
[»] scaffold0003 (1 HSPs)
scaffold0003 (2-151)||(86326-86475)
[»] chr8 (5 HSPs)
chr8 (158-316)||(544648-544820)
chr8 (220-316)||(40530914-40531010)
chr8 (158-228)||(23426932-23427002)
chr8 (220-267)||(31180414-31180461)
chr8 (176-219)||(31180480-31180523)
[»] chr3 (5 HSPs)
chr3 (225-316)||(18973084-18973175)
chr3 (159-228)||(2786886-2786955)
chr3 (158-220)||(55129436-55129498)
chr3 (234-268)||(55129530-55129564)
chr3 (184-228)||(3968960-3969005)
[»] chr1 (2 HSPs)
chr1 (233-313)||(38564596-38564676)
chr1 (159-220)||(38564504-38564565)
[»] chr7 (3 HSPs)
chr7 (158-219)||(24931568-24931629)
chr7 (159-216)||(26231738-26231795)
chr7 (234-270)||(46262467-46262503)
[»] chr2 (3 HSPs)
chr2 (158-219)||(9561211-9561272)
chr2 (231-312)||(42048644-42048725)
chr2 (234-269)||(9561143-9561178)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 2 - 316
Target Start/End: Original strand, 18556982 - 18557313
Alignment:
Q  2 tatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatagtgggtaaacta 101  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18556982 tatggcaatgtgcttcatgcgactatggaagaggggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatagtgggtaaacta 18557081  T
Q  102 acatgaagttcagagagaagtgatgacaatcagagaacttctgtggatgctagaactttttggttacagttccgtctttctggtcgtccaagcttctgtg 201  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18557082 acatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgctagaactttttggttacagttccgtctttctggtcgtccaagcttttgtg 18557181  T
Q  202 tgctttcccaacctcccc-----------------tcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatt 284  Q
    ||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18557182 tgctttcccaacctcccctcgtcgtcggtctttggtcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatt 18557281  T
Q  285 tgagatttttctcctccgcgaagaaagacggt 316  Q
    ||||||||||||||||||||||||||||||||    
T  18557282 tgagatttttctcctccgcgaagaaagacggt 18557313  T

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Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 24495010 - 24494868
Alignment:
Q  2 tatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatagtgggtaaacta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  24495010 tatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccaagattgtcacagtagatggtaggaatagtgggtaaactg 24494911  T
Q  102 acatgaagttcagagagaagtgatgacaatcagagaacttctg 144  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  24494910 acatgaagttcagagagaagtgatgacaaccagagaacttctg 24494868  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 12128584 - 12128673
Alignment:
Q  228 gtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggtg 317  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||||||||| |||  | ||||||||||||    
T  12128584 gtcctttaggtctgtaaagggccgtgcagttgtggtggatccagtctctggatgatttaagatttttctcttccatgtagaaagacggtg 12128673  T

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Target: scaffold0003 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 86475 - 86326
Alignment:
Q  2 tatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatagtgggtaaacta 101  Q
    ||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||     
T  86475 tatggcagtatgcttcatgcgactatggaagacgggattgatagtgagatacgtggcaccgagattgtcacagtagatggtaggaatagttggtaaactg 86376  T
Q  102 acatgaagttcagagagaagtgatgacaatcagagaacttctgtggatgc 151  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  86375 acatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgc 86326  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 158 - 316
Target Start/End: Complemental strand, 544820 - 544648
Alignment:
Q  158 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccctcg-----------------gcgtcgtcctttaggtct 240  Q
    ||||||||||  ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||                 ||||||||||||||||||    
T  544820 tttttggttattgttccttctttctggtcgtccaagcttctttgtgctttcccaacctctcctcgtcgtcggtctttggttggcgtcgtcctttaggtct 544721  T
Q  241 gtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggt 316  Q
     |||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||| |||||||||||||||    
T  544720 ataaagggtcgtgcagttgtggtggatc---tctctggatgatttgagatttttctcctctgcgaagaaagacggt 544648  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 220 - 316
Target Start/End: Original strand, 40530914 - 40531010
Alignment:
Q  220 tcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggt 316  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||| || || |||||||||||||||||||||| ||||||||||||||||    
T  40530914 tcggcggcgtcctttaggtctgcaaagggtcgtgcagttgtggtggatccagtccctggatgatttgagatttttctccttcgcgaagaaagacggt 40531010  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 23426932 - 23427002
Alignment:
Q  158 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccctcggcgtcg 228  Q
    ||||||||||  ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||    
T  23426932 tttttggttattgttccttctttctggtcgtccaagcttctgtgcgctttcccaacctctcctcgtcgtcg 23427002  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 267
Target Start/End: Complemental strand, 31180461 - 31180414
Alignment:
Q  220 tcggcgtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggat 267  Q
    |||||| ||| ||| ||||||| |||||||||||||||||||||||||    
T  31180461 tcggcggcgttcttaaggtctgcaaagggtcgtgcagttgtggtggat 31180414  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 31180523 - 31180480
Alignment:
Q  176 tctttctggtcgtccaagcttctgtgtgctttcccaacctcccc 219  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||    
T  31180523 tctttatggtcgtccaagcttctgtgcgctttccaaacctcccc 31180480  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 225 - 316
Target Start/End: Original strand, 18973084 - 18973175
Alignment:
Q  225 gtcgtcctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagacggt 316  Q
    |||||||||||||| || |||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||    
T  18973084 gtcgtcctttaggtttgcaaagggtcgtgcagttgtggtggatccagtctttggatgatttgagatttttctcctccgcgaagaaagacggt 18973175  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 2786955 - 2786886
Alignment:
Q  159 ttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccctcggcgtcg 228  Q
    |||||||||| ||||| | | ||||| |||||||||||||||| |||||||||||||||||||| |||||    
T  2786955 ttttggttactgttccttttatctggccgtccaagcttctgtgcgctttcccaacctcccctcgtcgtcg 2786886  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 55129436 - 55129498
Alignment:
Q  158 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccct 220  Q
    ||||||||||| ||||| ||||  | ||||||||||||||| || ||||||||||||||||||    
T  55129436 tttttggttactgttccttcttcttagtcgtccaagcttctatgcgctttcccaacctcccct 55129498  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 55129530 - 55129564
Alignment:
Q  234 taggtctgtaaagggtcgtgcagttgtggtggatc 268  Q
    |||||||| ||||||||||||||||||||||||||    
T  55129530 taggtctgcaaagggtcgtgcagttgtggtggatc 55129564  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 3969005 - 3968960
Alignment:
Q  184 gtcgtccaagcttctgtgtgctttcccaacctc-ccctcggcgtcg 228  Q
    |||||||||||||||||| |||||||||||||| |||||| |||||    
T  3969005 gtcgtccaagcttctgtgcgctttcccaacctctccctcgtcgtcg 3968960  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 38564596 - 38564676
Alignment:
Q  233 ttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaagac 313  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| ||||    
T  38564596 ttaggtctgcaaagggtcgtgcagttgtggtggatccagtctctggatgatttgagatttttctcctccacgaagatagac 38564676  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 38564504 - 38564565
Alignment:
Q  159 ttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccct 220  Q
    |||||||||| ||||| ||||| ||||||| |||||||||||| ||||||||||||||||||    
T  38564504 ttttggttactgttccttctttatggtcgtacaagcttctgtgcgctttcccaacctcccct 38564565  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Original strand, 24931568 - 24931629
Alignment:
Q  158 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccc 219  Q
    ||||||||||| ||||  |||| || |||||||||||||||||| |||||||||||||||||    
T  24931568 tttttggttactgttctttcttcctagtcgtccaagcttctgtgcgctttcccaacctcccc 24931629  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 26231738 - 26231795
Alignment:
Q  159 ttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctc 216  Q
    |||||||||  ||||| ||||||||| |||||||||| ||| | ||||||||||||||    
T  26231738 ttttggttattgttccttctttctgggcgtccaagctgctgcgcgctttcccaacctc 26231795  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 46262503 - 46262467
Alignment:
Q  234 taggtctgtaaagggtcgtgcagttgtggtggatcca 270  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  46262503 taggtctgcaaagggtcgtgcaattgtggtggatcca 46262467  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 219
Target Start/End: Complemental strand, 9561272 - 9561211
Alignment:
Q  158 tttttggttacagttccgtctttctggtcgtccaagcttctgtgtgctttcccaacctcccc 219  Q
    ||||||||||  ||||| |||| || |||||||||||||||||| |||||||||||||||||    
T  9561272 tttttggttattgttccttcttccttgtcgtccaagcttctgtgcgctttcccaacctcccc 9561211  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 42048725 - 42048644
Alignment:
Q  231 ctttaggtctgtaaagggtcgtgcagttgtggtggatccattctctagatgatttgagatttttctcctccgcgaagaaaga 312  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||| |||| || | | ||| |||||| ||||| ||||||    
T  42048725 ctttaggtctgcaaagggtcttgcagttgtggtggatccagtctctggatggttggtggtttatctccttcgcgatgaaaga 42048644  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 9561178 - 9561143
Alignment:
Q  234 taggtctgtaaagggtcgtgcagttgtggtggatcc 269  Q
    |||||||| |||||||||||||||||||||||||||    
T  9561178 taggtctgcaaagggtcgtgcagttgtggtggatcc 9561143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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