View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17615_low_40 (Length: 313)
Name: NF17615_low_40
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_40 |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 30319253 - 30318941
Alignment:
| Q |
1 |
cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30319253 |
cgagtattgtgaatccgaaaacccttctgcttctttttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctca |
30319154 |
T |
|
| Q |
101 |
gataattgatagcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcattacccttcaagaaatgtggccgcaaaatctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30319153 |
gataattgatagcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcattacccttcaagaaatgtggccgcaaaatctc |
30319054 |
T |
|
| Q |
201 |
caattcatgagcgacgtttggtttaaaacctcaattcttgaggaaagtgtgccacacaatgacgaggaaccttgagtgtagtctagattggtgacaacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30319053 |
caattcatgagcgacgtttggtttaaaacctcaattcttgaggaaagtgtgccacacaatgacgaggaaccttgagtgtagtctagattggtgacaacat |
30318954 |
T |
|
| Q |
301 |
cactccaatgacc |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30318953 |
cactccaatgacc |
30318941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 29170170 - 29170311
Alignment:
| Q |
1 |
cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctca |
100 |
Q |
| |
|
|||||||| |||| | |||||||||||||||||||||| || |||| |||| |||| ||| || |||||||||| | ||||||| || ||| ||| |
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| T |
29170170 |
cgagtattatgaacctgaaaacccttctgcttcttctttttcgtggccttagacaccacttcagtgaagggctcttctgtggcagcagaacgattcttca |
29170269 |
T |
|
| Q |
101 |
gataattgatagcggcctctctttcttcttcatcagtgtaaa |
142 |
Q |
| |
|
||| |||| || |||||||| ||||| ||||||||||||| |
|
|
| T |
29170270 |
aatatatgattgccgcctctctatcttcctcatcagtgtaaa |
29170311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 2344406 - 2344093
Alignment:
| Q |
1 |
cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctca |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
2344406 |
cgagtattgtgaacccgaaaacccttctgcttcttcttctttgtggatcgagactccacctcaatgtagggctcttccgaagcagcagtgtggtttctca |
2344307 |
T |
|
| Q |
101 |
gataattgatagcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcattacccttcaagaaatgtggccgcaaaatctc |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
2344306 |
gataactgatagcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctagcatcagtacccttcaagaaatgtggccgcaaaatctc |
2344207 |
T |
|
| Q |
201 |
caattcatgagcgacgttt-ggtttaaaacctcaattcttgaggaaagtgtgccacacaatgacgaggaaccttgagtgtagtctagattggtgacaaca |
299 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
2344206 |
caattcatgagcgacgtttgggtttaaaacctcaattcttgaggaaagtgtgccacacaatgacgaggaaccttgagtgtagtctagattagtgaaaaca |
2344107 |
T |
|
| Q |
300 |
tcactccaatgacc |
313 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2344106 |
tcactccaatgacc |
2344093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 24010244 - 24010460
Alignment:
| Q |
8 |
tgtgaatccgaaaacccttctgctt---cttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctcagata |
104 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| ||||| | || |||| ||||||||||| |||| ||||| || ||| || ||||||||| ||| |
|
|
| T |
24010244 |
tgtgaacccgaaaacccttctgcttacccttcttatttgttgctctagactccacctcaatgaagggttcttcaaaaacagtagaaaggttcctcaaata |
24010343 |
T |
|
| Q |
105 |
attgatagcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcattacccttcaagaaatgtggccgcaaaatctccaat |
204 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| | ||||||||||||| ||| ||| || ||| || || ||| | |||||| | |||| |||||||| |
|
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| T |
24010344 |
attgatagccacctctctctcttcctcatctgagtaaagttgaggcccaatgtttgtagcatgttttccattccaaaaatgttgttgcaagatctccaag |
24010443 |
T |
|
| Q |
205 |
tcatgagcgacgtttgg |
221 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
24010444 |
tcatgagcgacatttgg |
24010460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 3646858 - 3646549
Alignment:
| Q |
1 |
cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctca |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3646858 |
cgagtattgtgaacccgaaaacccttctgcttcttctt---tgtggatcgagactccacctcaatgtagggctcttccgaagcagtagtgcggttcctca |
3646762 |
T |
|
| Q |
101 |
gataattgatagcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcattacccttcaagaaatgtggccgcaaaatctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3646761 |
gataattgatagcggcctctctttctttttcatcagtgtaaagttgaggcacagagttcctagcatcattacccttcaagaaatgtggccgcaaaatctc |
3646662 |
T |
|
| Q |
201 |
caattcatgagcgacgtttggtttaaaacctcaattcttgaggaaagtgtgccacacaatgacgaggaaccttgagtgtagtctagattggtgacaacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3646661 |
caattcatgagcgacgtttggtttaaaacctcaattcttgaggaaattgtgccacacaatgacgaggaaccttgagtgtagtctagattagtgacaacat |
3646562 |
T |
|
| Q |
301 |
cactccaatgacc |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3646561 |
cactccaatgacc |
3646549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 15635536 - 15635222
Alignment:
| Q |
1 |
cgagtattgtgaatccgaaaacccttctgctt---cttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcc |
97 |
Q |
| |
|
||||||||||||| | |||| ||||||||||| ||||||||||||| | |||||| | ||||||||| |||||||||| ||||||| || ||||||| |
|
|
| T |
15635536 |
cgagtattgtgaacctgaaagcccttctgcttattcttcttctttgtgcaccgagactcaacctcaatgaagggctcttctgaagcagtagaacggttcc |
15635437 |
T |
|
| Q |
98 |
tcagataattgatagcggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcattacccttcaagaaatgtggccgcaaaat |
197 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
15635436 |
tcaaataattgatagcggcctctctttcttcctcatcagtgtaaagttgaggcacaaagttcttagcatcattacccttcaagaaatgtggccgcaaaat |
15635337 |
T |
|
| Q |
198 |
ctccaattcatgagcgacgttt-ggtttaaaacctcaattcttgaggaaagtgtgccacacaatgacgaggaaccttgagtgtagtctagattggtgaca |
296 |
Q |
| |
|
|||||| |||||||||| |||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |||||| ||| || ||| |
|
|
| T |
15635336 |
ctccaagtcatgagcgatgtttgggtttaaaacctcaattcttgaggcaagggtgc--cacaatgacgaggaaccttgagtgcagtctatattagtaaca |
15635239 |
T |
|
| Q |
297 |
acatcactccaatgacc |
313 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
15635238 |
gcatcactccaaggacc |
15635222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 177
Target Start/End: Original strand, 35638906 - 35639052
Alignment:
| Q |
31 |
ttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctcagataattgatagcggcctctctttcttctt |
130 |
Q |
| |
|
||||||||||||||||| | || ||||||||||| | ||||||| ||||||||||| || |||||||||||||||||||| ||| | || ||||| | |
|
|
| T |
35638906 |
ttcttcttctttgtggacttaaactccacctcaatgaaaggctctttcgaagcagcagagcagttcctcagataattgatagtggcgaccctctcttcct |
35639005 |
T |
|
| Q |
131 |
catcagtgtaaagttgaggcacaaagttcctatcatcattacccttc |
177 |
Q |
| |
|
||||| |||||||||| || ||||||| ||| ||||||| |||||| |
|
|
| T |
35639006 |
catcaaagtaaagttgaagcgcaaagttgctagcatcatttcccttc |
35639052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 7485922 - 7486145
Alignment:
| Q |
17 |
gaaaacccttctgcttcttcttctt---tgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctcagataattgatagc |
113 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| || |||| ||||||||||| |||| ||||||||||||| || |||||||||| |||||||||| | |
|
|
| T |
7485922 |
gaaaacccttctgcttattcttcttatttgtggctctagactccacctcaatgaagggttcttccgaagcagtagaacggttcctcaaataattgatatc |
7486021 |
T |
|
| Q |
114 |
ggcctctctttcttcttcatcagtgtaaagttgaggcacaaagttcctatcatcattacccttcaagaaatgtggccgcaaaatctccaattcatgagcg |
213 |
Q |
| |
|
|| | || ||||| ||||| ||||||||| ||||| ||||| | || | | ||| || ||| | |||||| |||||| |||||||| ||||||||| |
|
|
| T |
7486022 |
cgcttatc--tcttcctcatccgtgtaaagtcgaggcccaaagcttgtagcgtgatttccattccaaaaatgtttccgcaagatctccaaatcatgagcg |
7486119 |
T |
|
| Q |
214 |
acgttt-ggtttaaaacctcaattct |
238 |
Q |
| |
|
| ||| |||||||||||||| |||| |
|
|
| T |
7486120 |
agatttgggtttaaaacctcatttct |
7486145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 7627158 - 7627230
Alignment:
| Q |
70 |
ggctcttccgaagcagcagtgcggttcctcagataattgatagcggcctctctttcttcttcatcagtgtaaa |
142 |
Q |
| |
|
|||||||| | ||||| || ||||||| ||| |||||||||| | |||||| | |||||||||||||| |||| |
|
|
| T |
7627158 |
ggctcttctgtagcagtagagcggttcttcaaataattgatatcagcctctatctcttcttcatcagtataaa |
7627230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 10716774 - 10716915
Alignment:
| Q |
1 |
cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctca |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| || |||| || |||| |||||||| || || |||||| || ||||||| |||||| ||| |
|
|
| T |
10716774 |
cgagtattatgaatctaaaaacccttctgcttcttctttttcgtggctctagacaccacctcagtgaagtgctctttcgtggcagcagaacggttcttca |
10716873 |
T |
|
| Q |
101 |
gataattgatagcggcctctctttcttcttcatcagtgtaaa |
142 |
Q |
| |
|
||| |||| || |||||||| ||||| ||||||| ||||| |
|
|
| T |
10716874 |
aatatctgattgccgcctctctctcttcctcatcagggtaaa |
10716915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 10930544 - 10930685
Alignment:
| Q |
1 |
cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctcttccgaagcagcagtgcggttcctca |
100 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| || |||| || |||| |||||||| || || |||||| || ||||||| |||||| ||| |
|
|
| T |
10930544 |
cgagtattatgaatctaaaaacccttctgcttcttctttttcgtggctctagacaccacctcagtgaagtgctctttcgtggcagcagaacggttcttca |
10930643 |
T |
|
| Q |
101 |
gataattgatagcggcctctctttcttcttcatcagtgtaaa |
142 |
Q |
| |
|
||| |||| || |||||||| ||||| ||||||| ||||| |
|
|
| T |
10930644 |
aatatctgattgccgcctctctctcttcctcatcagggtaaa |
10930685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10681485 - 10681560
Alignment:
| Q |
1 |
cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctctt |
76 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||||||| || |||| | |||| |||||||| || ||||||||| |
|
|
| T |
10681485 |
cgagtattatgaatctgaaaacccatctgcttcttctttttcgtggccctagacaccacctcagtgaagggctctt |
10681560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 10895125 - 10895200
Alignment:
| Q |
1 |
cgagtattgtgaatccgaaaacccttctgcttcttcttctttgtggatcgagacgccacctcaatgtagggctctt |
76 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||||||| || |||| | |||| |||||||| || ||||||||| |
|
|
| T |
10895125 |
cgagtattatgaatctgaaaacccatctgcttcttctttttcgtggccctagacaccacctcagtgaagggctctt |
10895200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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