View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_45 (Length: 289)
Name: NF17615_low_45
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 44882096 - 44881837
Alignment:
| Q |
19 |
taagatactaataaaaagttatagcaaacaaatccttaacctttttatacataggatagtcattgaattaaaggtaatctaacaaatcttttctatagct |
118 |
Q |
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| T |
44882096 |
taagatactaataaaaagttatagcaaataaatccttaacctttttatacataggatagtcattgaattaaaggtaatccaacaaatcttttctatagct |
44881997 |
T |
|
| Q |
119 |
ctccctcttcaataaatcgatcctagttttctttttataggttatcactttcattatctttattgaaaggataattttgagtcaattttcgacccaaaat |
218 |
Q |
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||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
44881996 |
ctccctcttcaataaatcggtcctaattttctttttatacgttatcactttcattatctttattgaaaggatgattttgagtcaatttttgacccaaaat |
44881897 |
T |
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| Q |
219 |
catccccttcatcttgatttcttcaatcgaaataagtaattttaacattttcttgatgat |
278 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
44881896 |
cacccccttcatcttgatttcttcaatcgaaataagtaatttttacattttcttcatgat |
44881837 |
T |
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