View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_46 (Length: 276)
Name: NF17615_low_46
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 9159394 - 9159141
Alignment:
| Q |
1 |
atagagatgctcgaaggaaatatagagaatattgaaatgcctccaaaaccttctttccgtccaaatgaaattattgaggaagacctagaagtcaagtcta |
100 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9159394 |
atagagatgctcgaaggaaatattgagaatattgaaatgcctccaaaaccttctttctgtccaaatgaaattattgaggaagacctagaagtcaagtcta |
9159295 |
T |
|
| Q |
101 |
atgaaattgaatcagactcagttggttttattgaggaagatac-acagagcccttattgatgaattctgcttgatgaaagaggaaaaatatctttatagc |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9159294 |
atgaaattgaatcagactcagttggttttattgaggaagatacaacagagcccttattgatgaattctgcttgatgaatgaggaaaaatatctttatagc |
9159195 |
T |
|
| Q |
200 |
attatatcgaatcccacatttcttaaagatgataaactaactagccatgtttct |
253 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9159194 |
attatatcgaatcccatgtttcttaaagatgataaactaactagccatgtttct |
9159141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 9318598 - 9318710
Alignment:
| Q |
1 |
atagagatgctcgaaggaaatatagagaatattgaaatgcctccaaaaccttctttccgtccaaatgaaattattgaggaagacctagaagtcaagtcta |
100 |
Q |
| |
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||||||||||| ||||||||||| || |||||||||||||||||||| || ||||| |||||||||||| ||| |||||||||| || ||||| |||| |
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| T |
9318598 |
atagagatgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacgtcaactcta |
9318697 |
T |
|
| Q |
101 |
atgaaattgaatc |
113 |
Q |
| |
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||||||||||||| |
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| T |
9318698 |
atgaaattgaatc |
9318710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 9319704 - 9319592
Alignment:
| Q |
1 |
atagagatgctcgaaggaaatatagagaatattgaaatgcctccaaaaccttctttccgtccaaatgaaattattgaggaagacctagaagtcaagtcta |
100 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||||||||| || ||||| |||||||||||| ||| |||||||||| || |||| |||| |
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| T |
9319704 |
atagagatgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacatcaactcta |
9319605 |
T |
|
| Q |
101 |
atgaaattgaatc |
113 |
Q |
| |
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||||||||||||| |
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| T |
9319604 |
atgaaattgaatc |
9319592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 9348857 - 9348969
Alignment:
| Q |
1 |
atagagatgctcgaaggaaatatagagaatattgaaatgcctccaaaaccttctttccgtccaaatgaaattattgaggaagacctagaagtcaagtcta |
100 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||||||||||||||| |||||| | |||| |||||| |||| || |||||||||||||| | |||| |
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|
| T |
9348857 |
atagagatgctcgaaggagatattgaggatattgaaatgcctccaaagccttctctttatccagatgaaaatattcagtaagacctagaagtcgactcta |
9348956 |
T |
|
| Q |
101 |
atgaaattgaatc |
113 |
Q |
| |
|
||||||||||||| |
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|
| T |
9348957 |
atgaaattgaatc |
9348969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 9350021 - 9349909
Alignment:
| Q |
1 |
atagagatgctcgaaggaaatatagagaatattgaaatgcctccaaaaccttctttccgtccaaatgaaattattgaggaagacctagaagtcaagtcta |
100 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||||||||| || ||||| |||||||||||| ||| |||||||||| || |||| |||| |
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|
| T |
9350021 |
atagagatgcttgaaggaaatattgaaaatattgaaatgcctccaaagccctctttgtatccaaatgaaatgattcaggaagaccttgacatcaactcta |
9349922 |
T |
|
| Q |
101 |
atgaaattgaatc |
113 |
Q |
| |
|
||||||||||||| |
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|
| T |
9349921 |
atgaaattgaatc |
9349909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9255336 - 9255387
Alignment:
| Q |
1 |
atagagatgctcgaaggaaatatagagaatattgaaatgcctccaaaacctt |
52 |
Q |
| |
|
||||||||||| |||||| |||| |||||| |||||||||||||||| |||| |
|
|
| T |
9255336 |
atagagatgcttgaaggagatattgagaatgttgaaatgcctccaaagcctt |
9255387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 9433149 - 9433199
Alignment:
| Q |
2 |
tagagatgctcgaaggaaatatagagaatattgaaatgcctccaaaacctt |
52 |
Q |
| |
|
|||||||||| |||||| |||| || |||||||||||||||||||| |||| |
|
|
| T |
9433149 |
tagagatgcttgaaggagatattgaaaatattgaaatgcctccaaagcctt |
9433199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 15927504 - 15927616
Alignment:
| Q |
1 |
atagagatgctcgaaggaaatatagagaatattgaaatgcctccaaaaccttctttccgtccaaatgaaattattgaggaagacctagaagtcaagtcta |
100 |
Q |
| |
|
||||||||||| |||||| |||| |||||| |||||||||||||||| || ||||| |||||||||||| |||||||||||||| || ||||| |||| |
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| T |
15927504 |
atagagatgcttgaaggagatattgagaatgttgaaatgcctccaaagccctctttgtatccaaatgaaatgattgaggaagaccttgacgtcaactcta |
15927603 |
T |
|
| Q |
101 |
atgaaattgaatc |
113 |
Q |
| |
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|||||| |||||| |
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|
| T |
15927604 |
atgaaactgaatc |
15927616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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