View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_47 (Length: 273)
Name: NF17615_low_47
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 107 - 255
Target Start/End: Original strand, 20823698 - 20823846
Alignment:
| Q |
107 |
acactaagaggggcaatcctctgatttccacagccaaatcttgaactgcatcattgtcatgaccaacacatattcctcatgcaattctttaatctctagt |
206 |
Q |
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| T |
20823698 |
acactaagaggggcaatcctctgatttccacagccaaatcttgaactgcatcattgtcatgaccaacacatattcctcatgcaattctttaatctctagt |
20823797 |
T |
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| Q |
207 |
caagttgaaacaattgaaataaaacgaattgtgggattgttattcttat |
255 |
Q |
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| T |
20823798 |
caagttgaaacaattgaaataaaacgaattgtgggattgttattcttat |
20823846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 20823584 - 20823678
Alignment:
| Q |
16 |
acgaagagagtagtaaagatccaaatggtcgtgtaagaaattttagctctattatttatctagaattctacattggatagtatgtcaccttacac |
110 |
Q |
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| T |
20823584 |
acgaagagagtagtaaagatccaaatggtcgtgtaagaaattttagctatattatttatctagaattcaacattggatagtatgtcaccttacac |
20823678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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