View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_low_48 (Length: 273)

Name: NF17615_low_48
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_low_48
NF17615_low_48
[»] scaffold0455 (1 HSPs)
scaffold0455 (202-273)||(10845-10916)
[»] scaffold0038 (2 HSPs)
scaffold0038 (202-273)||(20494-20565)
scaffold0038 (202-273)||(20306-20377)
[»] chr6 (10 HSPs)
chr6 (202-273)||(28132939-28133010)
chr6 (202-273)||(28177229-28177300)
chr6 (202-273)||(28219996-28220067)
chr6 (202-273)||(28219808-28219879)
chr6 (212-273)||(9158661-9158722)
chr6 (212-249)||(9171730-9171767)
chr6 (205-273)||(7042352-7042420)
chr6 (214-273)||(28177053-28177112)
chr6 (212-249)||(9129112-9129149)
chr6 (220-249)||(28133151-28133180)
[»] chr3 (6 HSPs)
chr3 (185-273)||(9344729-9344817)
chr3 (209-273)||(9377996-9378060)
chr3 (226-273)||(9417387-9417434)
chr3 (224-273)||(41986568-41986617)
chr3 (205-273)||(9353811-9353879)
chr3 (185-273)||(9449182-9449270)
[»] chr2 (3 HSPs)
chr2 (13-62)||(13173672-13173723)
chr2 (21-61)||(27898516-27898556)
chr2 (32-70)||(31916906-31916944)
[»] chr8 (2 HSPs)
chr8 (202-253)||(44679862-44679913)
chr8 (202-254)||(44687945-44687997)
[»] chr1 (2 HSPs)
chr1 (23-77)||(33195098-33195152)
chr1 (220-273)||(4440700-4440753)


Alignment Details
Target: scaffold0455 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 10845 - 10916
Alignment:
Q  202 gattggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||||||| ||||||| ||||||||||||||||||||||| |||||| ||| |  ||||||||||||||||    
T  10845 gattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcatt 10916  T

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Target: scaffold0038 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 20565 - 20494
Alignment:
Q  202 gattggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||| |||||  |||||| |||||||||    
T  20565 gattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcatt 20494  T

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Target: scaffold0038; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 20306 - 20377
Alignment:
Q  202 gattggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| | |||||  |||| | |||||||||    
T  20306 gattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcatt 20377  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 28132939 - 28133010
Alignment:
Q  202 gattggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||||||| ||||||| ||||||||||||||||||||||| |||||| ||| |  ||||||||||||||||    
T  28132939 gattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcatt 28133010  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 28177300 - 28177229
Alignment:
Q  202 gattggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||| |||||  |||||| |||||||||    
T  28177300 gattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcatt 28177229  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 202 - 273
Target Start/End: Complemental strand, 28220067 - 28219996
Alignment:
Q  202 gattggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||| |||||  |||||| |||||||||    
T  28220067 gattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcatt 28219996  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 28219808 - 28219879
Alignment:
Q  202 gattggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||| | |||||  |||| | |||||||||    
T  28219808 gattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcatt 28219879  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 9158661 - 9158722
Alignment:
Q  212 aacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||||| |||||||||||||||||||||||||||||| || | |  ||| |||||||||||    
T  9158661 aacttccaaaggatcttctcaatctgatatcacaacgaatcaatgacgaagttgatctcatt 9158722  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 9171767 - 9171730
Alignment:
Q  212 aacttcctaaggatcttctcaatctgatatcacaacga 249  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  9171767 aacttccaaaggatcttctcaatctgatatcacaacga 9171730  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 7042420 - 7042352
Alignment:
Q  205 tggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    |||||| ||||||| | ||| |||||||||||||||||||||||| ||||   |||| |||||||||||    
T  7042420 tggtctaaacttccaacggagcttctcaatctgatatcacaacgaatcgataatgaagttgatctcatt 7042352  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 28177053 - 28177112
Alignment:
Q  214 cttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||| |||||||||||||||||||||||||||| | |||||  |||| | |||||||||    
T  28177053 cttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcatt 28177112  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 9129112 - 9129149
Alignment:
Q  212 aacttcctaaggatcttctcaatctgatatcacaacga 249  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  9129112 aacttccaaaggatattctcaatctgatatcacaacga 9129149  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 249
Target Start/End: Complemental strand, 28133180 - 28133151
Alignment:
Q  220 aaggatcttctcaatctgatatcacaacga 249  Q
    ||||||||||||||||||||||||||||||    
T  28133180 aaggatcttctcaatctgatatcacaacga 28133151  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 9344817 - 9344729
Alignment:
Q  185 catccatgacggaagccgattggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    |||||||| | || || |||||||||||||| || ||||||||||||||||| ||||| |||||  |||||  ||||||||||||||||    
T  9344817 catccatggcagatgcagattggtctgaactcccaaaggatcttctcaatcttatatcgcaacgcctcgacaatgaacttgatctcatt 9344729  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 9378060 - 9377996
Alignment:
Q  209 ctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    |||| ||||| | |||| |||||  |||||||||||||||  |||||||||||||||||||||||    
T  9378060 ctgagcttccaagggatattctctttctgatatcacaacgcctcgacgttgaacttgatctcatt 9377996  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 9417434 - 9417387
Alignment:
Q  226 cttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||| |||||||||||||||||| | |||| ||||||||||||||||    
T  9417434 cttctgaatctgatatcacaacgaattgacgatgaacttgatctcatt 9417387  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 41986617 - 41986568
Alignment:
Q  224 atcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||||||| | ||||||||||||||||||||  ||| ||||||||||||    
T  41986617 atcttctcagtttgatatcacaacgattcgacaatgatcttgatctcatt 41986568  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 9353879 - 9353811
Alignment:
Q  205 tggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    |||||||| ||||| |||||| || ||  |||||||||||||||  | ||||| |||||||||||||||    
T  9353879 tggtctgagcttccaaaggatattatctttctgatatcacaacgccttgacgtagaacttgatctcatt 9353811  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 9449270 - 9449182
Alignment:
Q  185 catccatgacggaagccgattggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    |||||||| | || || ||||||||| |||| || ||||| ||||||||||| ||||||||| |  |||||  |||||| |||||||||    
T  9449270 catccatggctgaggcagattggtctcaactcccaaaggaacttctcaatctcatatcacaaaggctcgacaatgaactcgatctcatt 9449182  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 13173672 - 13173723
Alignment:
Q  13 tgaaccaaac--gtcaaattaaaaatatttcctcccatcccctcccctcccc 62  Q
    ||||||||||  ||||||||||||||||||||| || |||||||||||||||    
T  13173672 tgaaccaaacatgtcaaattaaaaatatttccttccctcccctcccctcccc 13173723  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 27898556 - 27898516
Alignment:
Q  21 acgtcaaattaaaaatatttcctcccatcccctcccctccc 61  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  27898556 acgtcaaattaaaaatatttcctcccctcccctcctctccc 27898516  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 31916944 - 31916906
Alignment:
Q  32 aaaatatttcctcccatcccctcccctccccaccaaaaa 70  Q
    |||||||| |||||| |||||||||||||||||||||||    
T  31916944 aaaatattccctcccctcccctcccctccccaccaaaaa 31916906  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 44679862 - 44679913
Alignment:
Q  202 gattggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcg 253  Q
    ||||||||||||||||| || |||||| ||||||||||||| |||| |||||    
T  44679862 gattggtctgaacttccaaatgatcttgtcaatctgatatcgcaactattcg 44679913  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 44687945 - 44687997
Alignment:
Q  202 gattggtctgaacttcctaaggatcttctcaatctgatatcacaacgattcga 254  Q
    ||||||||||||||||| |  |||||| ||||||||||||| |||| ||||||    
T  44687945 gattggtctgaacttccaactgatcttgtcaatctgatatcgcaactattcga 44687997  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 33195098 - 33195152
Alignment:
Q  23 gtcaaattaaaaatatttcctcccatcccctcccctccccaccaaaaaactcgaa 77  Q
    |||||||||||||||||  || || |||||||| |||||||||||||| ||||||    
T  33195098 gtcaaattaaaaatattatctgccctcccctcctctccccaccaaaaagctcgaa 33195152  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 4440753 - 4440700
Alignment:
Q  220 aaggatcttctcaatctgatatcacaacgattcgacgttgaacttgatctcatt 273  Q
    ||||| |||||  |||||||||| |||||| ||||||||||||| |||||||||    
T  4440753 aaggagcttctacatctgatatcccaacgactcgacgttgaactcgatctcatt 4440700  T

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