View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_52 (Length: 257)
Name: NF17615_low_52
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 51 - 241
Target Start/End: Original strand, 35017643 - 35017833
Alignment:
| Q |
51 |
cctttttggtattgccatatcaataatttagattaatttatatttgttgtggtacagctgtcatcccaaggaccaacccatgatgagattgattttgagt |
150 |
Q |
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| T |
35017643 |
cctttttggtattgccatatcaataatttagattaatttatatttgttgtggtacagctgtcatcccaaggaccaacccatgatgagattgattttgagt |
35017742 |
T |
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| Q |
151 |
tcttgggaaacacaagtggtgacccttatattcttcacacaaacatcttcactcaaggtaaaggtaatagagaacaacaattctacctatg |
241 |
Q |
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| T |
35017743 |
tcttgggaaacacaagtggtgacccttatattcttcacacaaacatcttcactcaaggtaaaggtaatagagaacaacaattctacctatg |
35017833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 42991025 - 42991163
Alignment:
| Q |
100 |
tggtacagctgtcatcccaaggaccaacccatgatgagattgattttgagttcttgggaaacacaagtggtgacccttatattcttcacacaaacatctt |
199 |
Q |
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| T |
42991025 |
tggtgcagttgtcatcacaagggccaactcacgacgaaattgattttgagttcttgggaaatgttagcggtaatccttacattctccacacaaacgtgtt |
42991124 |
T |
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| Q |
200 |
cactcaaggtaaaggtaatagagaacaacaattctacct |
238 |
Q |
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| T |
42991125 |
ttctcaaggcaaaggaaacagagaacaacaattctacct |
42991163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 38214504 - 38214366
Alignment:
| Q |
100 |
tggtacagctgtcatcccaaggaccaacccatgatgagattgattttgagttcttgggaaacacaagtggtgacccttatattcttcacacaaacatctt |
199 |
Q |
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| T |
38214504 |
tggtgcagttgtcatcacagggaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgtt |
38214405 |
T |
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| Q |
200 |
cactcaaggtaaaggtaatagagaacaacaattctacct |
238 |
Q |
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| T |
38214404 |
ttctcaaggcaaaggaaacagagaacaacaattctacct |
38214366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 38218723 - 38218585
Alignment:
| Q |
100 |
tggtacagctgtcatcccaaggaccaacccatgatgagattgattttgagttcttgggaaacacaagtggtgacccttatattcttcacacaaacatctt |
199 |
Q |
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| T |
38218723 |
tggtgcagttgtcatcacagggaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgtt |
38218624 |
T |
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| Q |
200 |
cactcaaggtaaaggtaatagagaacaacaattctacct |
238 |
Q |
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| T |
38218623 |
ttctcaaggcaaaggaaacagagaacaacaattctacct |
38218585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 16942163 - 16942233
Alignment:
| Q |
165 |
agtggtgacccttatattcttcacacaaacatcttcactcaaggtaaaggtaatagagaacaacaattcta |
235 |
Q |
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| T |
16942163 |
agtggtgatccttatattcttcatacaaacgtattcacacaagggaaagggaatagagagcaacaattcta |
16942233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 17012828 - 17012898
Alignment:
| Q |
165 |
agtggtgacccttatattcttcacacaaacatcttcactcaaggtaaaggtaatagagaacaacaattcta |
235 |
Q |
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| T |
17012828 |
agtggtgatccttatattcttcatacaaacgtattcacacaagggaaagggaatagagagcaacaattcta |
17012898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 37188574 - 37188683
Alignment:
| Q |
132 |
gatgagattgattttgagttcttgggaaacacaagtggtgacccttatattcttcacacaaacatcttcactcaaggtaaaggtaatagagaacaacaat |
231 |
Q |
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| T |
37188574 |
gatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaat |
37188673 |
T |
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| Q |
232 |
tctacctatg |
241 |
Q |
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| T |
37188674 |
tctacctatg |
37188683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 52590710 - 52590816
Alignment:
| Q |
129 |
catgatgagattgattttgagttcttgggaaacacaagtggtgacccttatattcttcacacaaacatcttcactcaaggtaaaggtaatagagaacaac |
228 |
Q |
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| T |
52590710 |
catgatgaaatagattttgaatttttgggtaacttaagtggtgatccttatattgttcatacaaacatttatgcacaagggaaaggaaataaagaacaac |
52590809 |
T |
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| Q |
229 |
aattcta |
235 |
Q |
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| T |
52590810 |
aattcta |
52590816 |
T |
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