View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_low_54 (Length: 255)

Name: NF17615_low_54
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_low_54
NF17615_low_54
[»] chr2 (3 HSPs)
chr2 (102-210)||(41378355-41378463)
chr2 (15-49)||(41378270-41378304)
chr2 (226-255)||(41378513-41378542)
[»] chr8 (1 HSPs)
chr8 (101-160)||(25829424-25829483)
[»] chr5 (1 HSPs)
chr5 (101-160)||(23173132-23173191)
[»] chr7 (2 HSPs)
chr7 (101-161)||(33320618-33320678)
chr7 (101-161)||(30655758-30655817)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 41378355 - 41378463
Alignment:
Q  102 agtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacaccatacatccgaaccttccaaggatcaacctccaaccgaactg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41378355 agtaatgacgcaagcatatacctaagacataaccacaagcataccattgcgtcaacaccatacatccgaaccttccaaggatcaaccttcaaccgaactg 41378454  T
Q  202 tacacaagc 210  Q
     ||||||||    
T  41378455 cacacaagc 41378463  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 41378270 - 41378304
Alignment:
Q  15 caaaggggaaatcggttgctacacaaactccggct 49  Q
    ||||||||||||||||||| |||||||||||||||    
T  41378270 caaaggggaaatcggttgccacacaaactccggct 41378304  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 41378513 - 41378542
Alignment:
Q  226 caggccagcaaaggaaaacacccacttaag 255  Q
    ||||||||||||||||||||||||||||||    
T  41378513 caggccagcaaaggaaaacacccacttaag 41378542  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 25829424 - 25829483
Alignment:
Q  101 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacc 160  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||    
T  25829424 gagtaatgacgcaagcatatacttatgacacaaccacaagcatacccctgcttcaacacc 25829483  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 23173132 - 23173191
Alignment:
Q  101 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacc 160  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||    
T  23173132 gagtaatgacgcaagcatatacttatgacacaaccacaagcatacccctgcttcaacacc 23173191  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 33320678 - 33320618
Alignment:
Q  101 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacca 161  Q
    |||||||||||||| |||||||| | ||| |||||||||| ||| ||||||||||||||||    
T  33320678 gagtaatgacgcaaacatataccaatgacttaaccacaagaatagccctgcgtcaacacca 33320618  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 30655758 - 30655817
Alignment:
Q  101 gagtaatgacgcaagcatatacctaagacataaccacaagcatacccctgcgtcaacacca 161  Q
    ||||||||||||  ||||||||  | |||| | ||||||||||||||||||||||||||||    
T  30655758 gagtaatgacgccggcatatacaaatgaca-atccacaagcatacccctgcgtcaacacca 30655817  T

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