View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_58 (Length: 242)
Name: NF17615_low_58
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_58 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0932 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 17149274 - 17149506
Alignment:
| Q |
10 |
aagaatatgtgatgagaggattcagcttgctccatacaaaagcaacaagtagacacaattgtccaacctcttttcctcagattatcatcagttggcaatt |
109 |
Q |
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| T |
17149274 |
aagaaaatgtgatgagaggattcagcttgctccatacaaaagcaacaaatagacactattgtacaacctcttttcctcagattatcatcagttggcaatt |
17149373 |
T |
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| Q |
110 |
tatcatgtagaaatctccaagtgatgaaagatctagaaggggggatgaaagtagtccagataaattgtgaccaaggaatgcgttggctattaccatgcaa |
209 |
Q |
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| T |
17149374 |
tatcatgtagaaatctccaagtgatgaaagatctagaaggggggatgaaagtagtccagataaattgtgaccaaggaatgcgttggctattaccatgcaa |
17149473 |
T |
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| Q |
210 |
gctattgtaggctagtttattagtcatattacc |
242 |
Q |
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| T |
17149474 |
gctattgtaggctagtttattagtcatattacc |
17149506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0932 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0932
Description:
Target: scaffold0932; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 2361 - 2491
Alignment:
| Q |
28 |
gattcagcttgctccatacaaaagcaacaagtagacacaattgtccaacctcttttcctcagattatcatcagttggcaatttatcatgtagaaatctcc |
127 |
Q |
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| T |
2361 |
gattcaacttgtttcatacaaaagcaacagatggacactatcatacaccctctctttctcagattgtcatcagttggcagtttattatgtataaatctca |
2460 |
T |
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| Q |
128 |
aagtgatgaaagatctagaaggggggatgaa |
158 |
Q |
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| T |
2461 |
aagtgataaaagatctagtagggggaatgaa |
2491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 170
Target Start/End: Complemental strand, 9714810 - 9714684
Alignment:
| Q |
44 |
tacaaaagcaacaagtagacacaattgtccaacctcttttcctcagattatcatcagttggcaatttatcatgtagaaatctccaagtgatgaaagatct |
143 |
Q |
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| T |
9714810 |
tacagaagcaacaaatggaaacaattatgctacctctttttctaagattctcatcagttggaagtttatcatggataagtctccaagtgatgaaagctct |
9714711 |
T |
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| Q |
144 |
agaaggggggatgaaagtagtccagat |
170 |
Q |
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| T |
9714710 |
tgtggggggtatgaaagaattccagat |
9714684 |
T |
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