View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17615_low_6 (Length: 644)
Name: NF17615_low_6
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 379 - 628
Target Start/End: Complemental strand, 46398594 - 46398345
Alignment:
| Q |
379 |
tttatacttatttctttctaagattctaatggaagtgtgcatttatctcatttcaaggggaccagcaatattcaaatcggcattgtgcaannnnnnnnaa |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46398594 |
tttatacttatttctttctaagattctaatggaagtgtgcatttatctcatttcaaggggaccagcaatattcaaatcggcattgtgcaaatttttttaa |
46398495 |
T |
|
| Q |
479 |
gtaataaactcaagttgttagtgagttttaaattttaacaaatgacaaaaatcgagtttgttttccttgtgcaataattctttttatcaaactttatcta |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46398494 |
gtaataaactcaagttgttagtgagttttaaattttaacaaatgacaaaaatcgagtttgttttccttgtgcaataattctttttatcaaactttatcta |
46398395 |
T |
|
| Q |
579 |
gtggccgaacaccaatttactaatgtattttcttataaaaatcagagact |
628 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46398394 |
gtggccgaacaccaatttactaatgtcttttcttataaaaatcagagact |
46398345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 46398960 - 46398780
Alignment:
| Q |
16 |
aatattatggaagattttctacgtggtcaaatccttactttattttctttcattttctagaaagcagagaaaacaaaatcaaattttccttcgaattatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46398960 |
aatattatggaagattttctacgtggtcaaatccttactttattttctttcattttctagaaagcagagaaaacaaaatcaaattttccttcgaattatt |
46398861 |
T |
|
| Q |
116 |
tagttttctgcagggactacgtaacatactcaa-tagcattcggtgaactatatttccctagccgtcatttagattgtgta |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46398860 |
tagttttctgcagggactacgtaacatactcaattagcattcggtgaactatatttccctagccgtcatttagattgtgta |
46398780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 46398752 - 46398698
Alignment:
| Q |
223 |
agtgtgcagatggtacttcaatccaaattagagaatactttaaagctcattagcg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46398752 |
agtgtgcagatggtacttcaatccaaattagagaatactttaaagctcattagcg |
46398698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University