View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_low_60 (Length: 237)

Name: NF17615_low_60
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_low_60
NF17615_low_60
[»] chr4 (2 HSPs)
chr4 (15-218)||(28930817-28931039)
chr4 (117-179)||(4762528-4762590)
[»] chr2 (4 HSPs)
chr2 (85-188)||(35123147-35123251)
chr2 (122-170)||(42616723-42616771)
chr2 (138-186)||(44458226-44458274)
chr2 (140-175)||(6600758-6600793)
[»] chr1 (4 HSPs)
chr1 (137-193)||(49825865-49825921)
chr1 (122-168)||(26161587-26161633)
chr1 (140-173)||(35742560-35742593)
chr1 (137-186)||(45463222-45463271)
[»] chr6 (3 HSPs)
chr6 (122-168)||(19390977-19391023)
chr6 (132-185)||(24769325-24769378)
chr6 (132-168)||(32392369-32392405)
[»] chr7 (2 HSPs)
chr7 (131-188)||(5260404-5260460)
chr7 (122-186)||(44124546-44124610)
[»] chr8 (3 HSPs)
chr8 (155-186)||(7864498-7864529)
chr8 (122-170)||(26445499-26445547)
chr8 (141-197)||(33521076-33521132)
[»] chr5 (3 HSPs)
chr5 (120-171)||(21780861-21780912)
chr5 (120-168)||(13510279-13510327)
chr5 (140-180)||(27725528-27725568)
[»] chr3 (1 HSPs)
chr3 (122-188)||(50402635-50402701)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 218
Target Start/End: Original strand, 28930817 - 28931039
Alignment:
Q  15 ttattctcacactagttatgttctcgtggtacatttgtggtactactattcagggtttcaa-------------------ttgtgaaatatagcggtata 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||    
T  28930817 ttattctcacactagttatgttctcgtggtacatttgtggtactactattcagggtttcaattggtggcaatgttgtcaattgtgaaatatagcggtata 28930916  T
Q  96 ttcaaatcggctatgcaactgtgtgttatagtgccgctataactgctatttgacattactttgtactaaatagtgtattgcggaataatagtgttttatg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28930917 ttcaaatcggctatgcaactgtgtgttatagtgccgctataactgctatttgacattactttgtactaaatagtgtattgcggaataatagtgttttatg 28931016  T
Q  196 ttggctgttatttaacaacactg 218  Q
    |||||||||||||||||||||||    
T  28931017 ttggctgttatttaacaacactg 28931039  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 4762528 - 4762590
Alignment:
Q  117 tgtgttatagtgccgctataactgctatttgacattactttgtactaaatagtgtattgcgga 179  Q
    |||| ||| ||||| ||||||| |||||||||||  | |||||||||||||| ||||||||||    
T  4762528 tgtgctatggtgccactataacggctatttgacaacattttgtactaaatagcgtattgcgga 4762590  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 188
Target Start/End: Complemental strand, 35123251 - 35123147
Alignment:
Q  85 atagcggtatattcaaat-cggctatgcaactgtgtgttatagtgccgctataactgctatttgacattactttgtactaaatagtgtattgcggaataa 183  Q
    |||||||||| |||| || | |||||| ||| |||||||||||  || ||| | |||||||||||||||||||||||| |||||||||||| ||||||||    
T  35123251 atagcggtatgttcagattctgctatgaaacagtgtgttatagcaccactacagctgctatttgacattactttgtaccaaatagtgtattacggaataa 35123152  T
Q  184 tagtg 188  Q
    |||||    
T  35123151 tagtg 35123147  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 42616723 - 42616771
Alignment:
Q  122 tatagtgccgctataactgctatttgacattactttgtactaaatagtg 170  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  42616723 tatagtgccactataactgctatttgacaacactttgtactaaatagtg 42616771  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 44458226 - 44458274
Alignment:
Q  138 ctgctatttgacattactttgtactaaatagtgtattgcggaataatag 186  Q
    ||||||||||||| |||||||||||||||| ||||| |||||| |||||    
T  44458226 ctgctatttgacaatactttgtactaaatattgtatcgcggaacaatag 44458274  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 6600793 - 6600758
Alignment:
Q  140 gctatttgacattactttgtactaaatagtgtattg 175  Q
    |||||||||||| |||||||||||||||||||||||    
T  6600793 gctatttgacatcactttgtactaaatagtgtattg 6600758  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 49825921 - 49825865
Alignment:
Q  137 actgctatttgacattactttgtactaaatagtgtattgcggaataatagtgtttta 193  Q
    |||||||||| ||| || |||||||||||||||||||||| ||| ||||||||||||    
T  49825921 actgctatttcacaatattttgtactaaatagtgtattgcagaacaatagtgtttta 49825865  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 26161587 - 26161633
Alignment:
Q  122 tatagtgccgctataactgctatttgacattactttgtactaaatag 168  Q
    ||||| || |||||| ||||||||||||| |||||||||||||||||    
T  26161587 tatagcgcggctatagctgctatttgacaatactttgtactaaatag 26161633  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 35742560 - 35742593
Alignment:
Q  140 gctatttgacattactttgtactaaatagtgtat 173  Q
    ||||||||||| ||||||||||||||||||||||    
T  35742560 gctatttgacaatactttgtactaaatagtgtat 35742593  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 45463271 - 45463222
Alignment:
Q  137 actgctatttgacattactttgtactaaatagtgtattgcggaataatag 186  Q
    |||||||||||||| ||  |||||||||||||||||| | ||||||||||    
T  45463271 actgctatttgacaatatgttgtactaaatagtgtatagtggaataatag 45463222  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 19391023 - 19390977
Alignment:
Q  122 tatagtgccgctataactgctatttgacattactttgtactaaatag 168  Q
    ||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  19391023 tatagcgccactataactgctatttgacaatactttgtactaaatag 19390977  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 24769378 - 24769325
Alignment:
Q  132 ctataactgctatttgacattactttgtactaaatagtgtattgcggaataata 185  Q
    |||||||  |||||||||| ||||||||||||||||||||||||| ||| ||||    
T  24769378 ctataacctctatttgacaatactttgtactaaatagtgtattgcagaacaata 24769325  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 32392369 - 32392405
Alignment:
Q  132 ctataactgctatttgacattactttgtactaaatag 168  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  32392369 ctatagctgctatttgacaatactttgtactaaatag 32392405  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 5260460 - 5260404
Alignment:
Q  131 gctataactgctatttgacattactttgtactaaatagtgtattgcggaataatagtg 188  Q
    |||||| ||||||||||||| || |||||||||||||| | |||||||||||||||||    
T  5260460 gctatagctgctatttgacaatattttgtactaaatagcg-attgcggaataatagtg 5260404  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 44124610 - 44124546
Alignment:
Q  122 tatagtgccgctataactgctatttgacattactttgtactaaatagtgtattgcggaataatag 186  Q
    ||||| ||||||||| | ||||||||||| || | ||||||||||||||||| || ||| |||||    
T  44124610 tatagcgccgctatatcagctatttgacaatattctgtactaaatagtgtatcgcagaacaatag 44124546  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 186
Target Start/End: Complemental strand, 7864529 - 7864498
Alignment:
Q  155 tttgtactaaatagtgtattgcggaataatag 186  Q
    ||||||||||||||||||||||||||||||||    
T  7864529 tttgtactaaatagtgtattgcggaataatag 7864498  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 26445499 - 26445547
Alignment:
Q  122 tatagtgccgctataactgctatttgacattactttgtactaaatagtg 170  Q
    ||||| ||| |||||||||||||||||||   |||||||||||||||||    
T  26445499 tatagcgccactataactgctatttgacaacgctttgtactaaatagtg 26445547  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 33521132 - 33521076
Alignment:
Q  141 ctatttgacattactttgtactaaatagtgtattgcggaataatagtgttttatgtt 197  Q
    ||||||||||||| |||| ||||||||||||||||| |||  |||||| ||| ||||    
T  33521132 ctatttgacattattttgcactaaatagtgtattgcagaacgatagtgatttttgtt 33521076  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 21780912 - 21780861
Alignment:
Q  120 gttatagtgccgctataactgctatttgacattactttgtactaaatagtgt 171  Q
    ||||||||||| |||||  || |||||||||| |||||||||||||||||||    
T  21780912 gttatagtgccactatagttggtatttgacatcactttgtactaaatagtgt 21780861  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 13510279 - 13510327
Alignment:
Q  120 gttatagtgccgctataactgctatttgacattactttgtactaaatag 168  Q
    ||||||||||| |||||  || |||||||||| ||||||||||||||||    
T  13510279 gttatagtgccactatagttggtatttgacatcactttgtactaaatag 13510327  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 27725568 - 27725528
Alignment:
Q  140 gctatttgacattactttgtactaaatagtgtattgcggaa 180  Q
    ||||||||||| || |||||||||||||||| |||||||||    
T  27725568 gctatttgacaatattttgtactaaatagtggattgcggaa 27725528  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 50402635 - 50402701
Alignment:
Q  122 tatagtgccgctataactgctatttgacattactttgtactaaatagtgtattgcggaataatagtg 188  Q
    ||||| || |||||| |||||||||||||  ||||| ||||||||||  |||||||||| |||||||    
T  50402635 tatagcgcagctatagctgctatttgacaacactttatactaaatagcatattgcggaacaatagtg 50402701  T

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