View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_64 (Length: 228)
Name: NF17615_low_64
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 17649533 - 17649728
Alignment:
| Q |
19 |
gtcttgacatggatgctgctccaggtgatgatgatgctccttctggtgcaggtggtgctggctctaagattgaagaagtggactaaatgtagttactttc |
118 |
Q |
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| T |
17649533 |
gtcttgacatggatgccgctccaggtgatgatgatgctccttctggtgcaggtggtgctggctctaagattgaggaagtggactaaatgtagttactttc |
17649632 |
T |
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| Q |
119 |
ttctgatatgtagtttatattttcttgttataattttgttttgatgtattaatctcactggacttaacatcgaggttttggctggattgccatttt |
214 |
Q |
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| T |
17649633 |
ttctgatatgtagtttatattttcttgctataattttgttttgatgtattaatctcactggacttaacatccaggttttggctggattgcgatttt |
17649728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 17706900 - 17707083
Alignment:
| Q |
19 |
gtcttgacatggatgctgctccaggtgatgatgatgctccttctggtgcaggtggtgctggctctaagattgaagaagtggactaaatgtagttactttc |
118 |
Q |
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|||||| |||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||| | || ||| ||||||||||| |
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| T |
17706900 |
gtcttggcatggatgctgctccagggaatgatgatgttccttctggtgcaggcggtgctggctctaagattgaggaagagaaccaaacttagttactttc |
17706999 |
T |
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| Q |
119 |
ttctgatatgtagtttatattttcttgttataattttgttttgatgtattaatctcactggacttaacatcgaggttttggctgg |
203 |
Q |
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| T |
17707000 |
ttctgatatgtggtttatattttcatg-tataattttgttttgatgtattaatctcgctggatttaacttcgacgttttggctgg |
17707083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 39984583 - 39984435
Alignment:
| Q |
23 |
tgacatggatgctgctccaggtgatgatgatgctccttctggtgcaggtggtgctggctctaagattgaagaagtggactaaatgtagttactttcttct |
122 |
Q |
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|||||||| ||||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||| || || |||||||| ||||| |||||||| |
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| T |
39984583 |
tgacatgggtgctgctcccggtgatgatgatgctccttcccatgcaggcggtgctggccctaagattgaggaggtcgactaaatatagttgatttcttct |
39984484 |
T |
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| Q |
123 |
gata--tgtag-tttatattttcttgttataattttgttttgatgtatt |
168 |
Q |
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|||| ||| | |||||||||| ||||||||||||||||||||||||| |
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| T |
39984483 |
gatatctgtggttttatattttgatgttataattttgttttgatgtatt |
39984435 |
T |
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