View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_65 (Length: 226)
Name: NF17615_low_65
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 47935322 - 47935517
Alignment:
| Q |
14 |
aatattagtgcatgtagttttattgttcgtcaaaaacattctaatatccaatatataaaacataaatgtgagtatttaatatgtgggttcaaggacaata |
113 |
Q |
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| T |
47935322 |
aatattagtgcatttagttttattgttcgtcaaaaacattctagcatccaatatataaaacataaatgtgagtatttaatatgtgggttcaaggacaata |
47935421 |
T |
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| Q |
114 |
attatttcttccctcccctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcataagt |
209 |
Q |
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| T |
47935422 |
attatttcttccctcccctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacaatatggttctgcagcataagt |
47935517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 47928004 - 47928079
Alignment:
| Q |
130 |
cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcat |
205 |
Q |
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| T |
47928004 |
cctccaaagtagaatacaggatcttttccatatggagcgtcattgagggcactgtaacaatatggttctgcagcat |
47928079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 47918242 - 47918310
Alignment:
| Q |
130 |
cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttct |
198 |
Q |
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| T |
47918242 |
cctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggttct |
47918310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 206
Target Start/End: Original strand, 47946580 - 47946656
Alignment:
| Q |
130 |
cctccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacagtatggttctgcagcata |
206 |
Q |
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| T |
47946580 |
cctccaaaaaagaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcata |
47946656 |
T |
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