View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17615_low_66 (Length: 222)
Name: NF17615_low_66
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17615_low_66 |
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Alignment Details
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 37385354 - 37385437
Alignment:
| Q |
132 |
gttaattaaatgtgtatatataatgtaccaggacatctgaagtggcattatcataaccagtagcagcagaagcaaaggagacac |
215 |
Q |
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| T |
37385354 |
gttaattaaatgtgtatatataatgtaccaggacatctgaagtggcattatcataaccagtagcagcagaagcaaaggagacac |
37385437 |
T |
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Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 37385241 - 37385325
Alignment:
| Q |
19 |
ataccgtgaaaaacacaagagatgcattttatagctagagaataaacactaccatttagagaattcataggtttataagtagcat |
103 |
Q |
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| T |
37385241 |
ataccgtgaaaaacacaagagatgcattttatagctagagaataaacactaccatttagtgaattcataagtttataagtagcat |
37385325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 36599311 - 36599268
Alignment:
| Q |
164 |
acatctgaagtggcattatcataaccagtagcagcagaagcaaa |
207 |
Q |
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| T |
36599311 |
acatctgaagttgcattatcataaccagtagcagcagaagcaaa |
36599268 |
T |
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