View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17615_low_9 (Length: 547)

Name: NF17615_low_9
Description: NF17615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17615_low_9
NF17615_low_9
[»] chr2 (4 HSPs)
chr2 (238-536)||(29669409-29669713)
chr2 (17-179)||(29669726-29669888)
chr2 (238-331)||(4707252-4707345)
chr2 (181-237)||(36500713-36500770)
[»] scaffold0036 (1 HSPs)
scaffold0036 (237-345)||(92185-92293)
[»] chr6 (3 HSPs)
chr6 (174-232)||(8135382-8135441)
chr6 (178-236)||(892422-892481)
chr6 (174-232)||(8064441-8064499)
[»] chr3 (1 HSPs)
chr3 (174-236)||(17144806-17144869)
[»] chr4 (4 HSPs)
chr4 (174-232)||(23120334-23120393)
chr4 (174-230)||(36106497-36106554)
chr4 (284-331)||(46148687-46148734)
chr4 (177-232)||(48293485-48293541)
[»] chr7 (1 HSPs)
chr7 (174-231)||(8568631-8568689)
[»] chr8 (3 HSPs)
chr8 (281-382)||(12221946-12222047)
chr8 (238-313)||(12136092-12136167)
chr8 (174-231)||(44336719-44336777)
[»] chr1 (5 HSPs)
chr1 (174-242)||(40095498-40095567)
chr1 (177-240)||(35980467-35980531)
chr1 (174-232)||(27507568-27507627)
chr1 (174-232)||(36203520-36203579)
chr1 (174-237)||(12973501-12973565)
[»] scaffold0204 (1 HSPs)
scaffold0204 (174-231)||(14470-14528)
[»] scaffold0688 (2 HSPs)
scaffold0688 (174-230)||(1107-1164)
scaffold0688 (174-230)||(7676-7733)
[»] chr5 (2 HSPs)
chr5 (174-230)||(34087368-34087425)
chr5 (177-232)||(27572125-27572181)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 8e-84; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 238 - 536
Target Start/End: Complemental strand, 29669713 - 29669409
Alignment:
Q  238 ctttgacggtggaaatttaccgttcagctaaaatcacggtggcaatccacgtttgtagtgaagctaggaatattagcttcttgaaatcacggtagatttg 337  Q
    ||||| ||| ||||||||  |||||| ||||||||||  ||||||||||||||| ||||||| |||||||||||||||||||| |||| |   | |||||    
T  29669713 ctttggcggaggaaatttcacgttcacctaaaatcacaatggcaatccacgtttatagtgaaactaggaatattagcttcttggaatcgcaacaaatttg 29669614  T
Q  338 ctttggttactatgcagatgcacatttggtgaga------ataacgtcttttcaaacagacacttggtcactattgtagtaagaaattttcatacgtttt 431  Q
     | |||||||| ||||||||||| |||||||||       |||||| |||||||||||||||||| |||||||||||| |||||||||| || |||||||    
T  29669613 ttgtggttactgtgcagatgcacgtttggtgagggtgaggataacgccttttcaaacagacacttagtcactattgtactaagaaatttccaaacgtttt 29669514  T
Q  432 atcaaagatgaaaaggtttttgctttgagatggtgtttaaattttgatttgatcaagtcaaattatgaattgttcaacttgtatggaacaatgtgagaga 531  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||    
T  29669513 atcaaagattaaaatgtttttgctttgagttggtgtttaaattttgatttgatcaaatcaaattatgaatcgttcaacttgtatggaataatgtgagaga 29669414  T
Q  532 tctct 536  Q
    |||||    
T  29669413 tctct 29669409  T

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Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 29669888 - 29669726
Alignment:
Q  17 atttgagacttatgagtgagatacacatggcaatagataactgtcaaatcacaacaggaatatcatcaggttccacaagtcaactaaatttctaagtgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29669888 atttgagacttatgagtgagatacacatggcaatagataactgtcaaatcacaacaggaatatcatcaggttccacaagtcaactaaatttgtaagtgtt 29669789  T
Q  117 tgaagtttggaagtttccaaacaaatatacgaatttagattaatcacatttaaaatatatctt 179  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| ||  ||||||||||||||    
T  29669788 tgaagtctggaagtttccaaacaaatatacaaatttagattaattacggttaaaatatatctt 29669726  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 4707252 - 4707345
Alignment:
Q  238 ctttgacggtggaaatttaccgttcagctaaaatcacggtggcaatccacgtttgtagtgaagctaggaatattagcttcttgaaatcacggta 331  Q
    ||||| |||||||||||   | |||||| ||||||||||| |||||||| |||| | ||| ||||||||||||||||||||| |||||||||||    
T  4707252 ctttgtcggtggaaattccacattcagccaaaatcacggtagcaatccatgtttattgtgtagctaggaatattagcttcttaaaatcacggta 4707345  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 36500713 - 36500770
Alignment:
Q  181 cggttcggatgactttta-cctcaaaactgaatcaaaacgcactgcgaacacctctaa 237  Q
    |||||||||||||||||| ||||||||| |||||||| |||  |||||||||||||||    
T  36500713 cggttcggatgacttttagcctcaaaaccgaatcaaaccgctttgcgaacacctctaa 36500770  T

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Target: scaffold0036 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 237 - 345
Target Start/End: Original strand, 92185 - 92293
Alignment:
Q  237 actttgacggtggaaatttaccgttcagctaaaatcacggtggcaatccacgtttgtagtgaagctaggaatattagcttcttgaaatcacggtagattt 336  Q
    |||||||||| |||||||   |||| |||||||||||| ||||||||||| |||| ||||||| |||| ||||||| ||||||||||| |  ||||||||    
T  92185 actttgacggaggaaattccacgtttagctaaaatcaccgtggcaatccaagtttatagtgaaactagaaatattaacttcttgaaattattgtagattt 92284  T
Q  337 gctttggtt 345  Q
    | |||||||    
T  92285 gatttggtt 92293  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 8135441 - 8135382
Alignment:
Q  174 tatcttgcggttcggatgactttta-cctcaaaactgaatcaaaacgcactgcgaacacc 232  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||||||||    
T  8135441 tatcttgcggttcggatgacttttagcctcaaaaccgaaccaaaacgcaccgcgaacacc 8135382  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 892422 - 892481
Alignment:
Q  178 ttgcggttcggatgactttta-cctcaaaactgaatcaaaacgcactgcgaacacctcta 236  Q
    ||||||||||||||||||||| ||| |||| |||| |||| ||||| |||||||||||||    
T  892422 ttgcggttcggatgacttttagccttaaaattgaaccaaaccgcaccgcgaacacctcta 892481  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 8064499 - 8064441
Alignment:
Q  174 tatcttgcggttcggatgacttttacctcaaaactgaatcaaaacgcactgcgaacacc 232  Q
    ||||||||||||||||||| ||||| | |||||| |||  |||| ||||||||||||||    
T  8064499 tatcttgcggttcggatgatttttagcccaaaaccgaactaaaatgcactgcgaacacc 8064441  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 17144806 - 17144869
Alignment:
Q  174 tatcttgcggttcggatgactttta-cctcaaaactgaatcaaaacgcactgcgaacacctcta 236  Q
    |||||||||||| |||||||||||| ||||||||| ||| |||| |||||||||||||||||||    
T  17144806 tatcttgcggtttggatgacttttagcctcaaaaccgaaccaaaccgcactgcgaacacctcta 17144869  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 23120334 - 23120393
Alignment:
Q  174 tatcttgcggttcggatgacttttacc-tcaaaactgaatcaaaacgcactgcgaacacc 232  Q
    ||||||||||||||||||||||||||| ||||||  |||||||| ||||| |||||||||    
T  23120334 tatcttgcggttcggatgacttttaccttcaaaatcgaatcaaaccgcaccgcgaacacc 23120393  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 36106497 - 36106554
Alignment:
Q  174 tatcttgcggttcggatgactttt-acctcaaaactgaatcaaaacgcactgcgaaca 230  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| ||||| |||||||    
T  36106497 tatcttgcggttcggatgacttttaacctcaaaaccgaaccaaaccgcaccgcgaaca 36106554  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 46148687 - 46148734
Alignment:
Q  284 ccacgtttgtagtgaagctaggaatattagcttcttgaaatcacggta 331  Q
    ||||||||| ||||||||||||||||||||||| || |||| ||||||    
T  46148687 ccacgtttgcagtgaagctaggaatattagcttattaaaattacggta 46148734  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 48293485 - 48293541
Alignment:
Q  177 cttgcggttcggatgactttt-acctcaaaactgaatcaaaacgcactgcgaacacc 232  Q
    ||||||||||||||||||||| |||||||||| ||| ||||  |||| |||||||||    
T  48293485 cttgcggttcggatgacttttaacctcaaaaccgaaccaaactgcaccgcgaacacc 48293541  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 8568631 - 8568689
Alignment:
Q  174 tatcttgcggttcggatgactttt-acctcaaaactgaatcaaaacgcactgcgaacac 231  Q
    |||||||||||||||||||||||| |||||||||| ||| |||| ||||| ||||||||    
T  8568631 tatcttgcggttcggatgacttttaacctcaaaaccgaaccaaaccgcaccgcgaacac 8568689  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 281 - 382
Target Start/End: Complemental strand, 12222047 - 12221946
Alignment:
Q  281 aatccacgtttgtagtgaagctaggaatattagcttcttgaaatcacggtagatttgctttggttactatgcagatgcacatttggtgagaataacgtct 380  Q
    |||||| ||||| ||||||  || |||||||||||| || ||||||||||| ||||| |||||||| | || |||||||  |||| ||||  ||||||||    
T  12222047 aatccatgtttgcagtgaaattaagaatattagcttttttaaatcacggtaaatttgttttggttattgtgtagatgcatctttgatgagggtaacgtct 12221948  T
Q  381 tt 382  Q
    ||    
T  12221947 tt 12221946  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 12136092 - 12136167
Alignment:
Q  238 ctttgacggtggaaatttaccgttcagctaaaatcacggtggcaatccacgtttgtagtgaagctaggaatattag 313  Q
    ||||| |||||||||||   |||||  | ||||||||||| ||||| ||||||| | |||||||||||||||||||    
T  12136092 ctttggcggtggaaattccacgttcgaccaaaatcacggtagcaatgcacgtttattgtgaagctaggaatattag 12136167  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 44336777 - 44336719
Alignment:
Q  174 tatcttgcggttcggatgactttt-acctcaaaactgaatcaaaacgcactgcgaacac 231  Q
    |||||||||||||||||||||||| | |||||||| ||| |||| ||||| ||||||||    
T  44336777 tatcttgcggttcggatgacttttaaactcaaaaccgaaccaaaccgcaccgcgaacac 44336719  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 40095498 - 40095567
Alignment:
Q  174 tatcttgcggttcggatgactttt-acctcaaaactgaatcaaaacgcactgcgaacacctctaactttg 242  Q
    ||||||||||||||||| |||||| |||||||||| ||| |||| ||||| ||||||||| |||| ||||    
T  40095498 tatcttgcggttcggataacttttaacctcaaaaccgaaccaaaccgcaccgcgaacacccctaattttg 40095567  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 35980467 - 35980531
Alignment:
Q  177 cttgcggttcggatgactttta-cctcaaaactgaatcaaaacgcactgcgaacacctctaactt 240  Q
    |||||||||||||||||||||| ||||||||| ||| |||| ||||| || |||||| |||||||    
T  35980467 cttgcggttcggatgacttttagcctcaaaaccgaaccaaaccgcaccgcaaacacccctaactt 35980531  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 27507568 - 27507627
Alignment:
Q  174 tatcttgcggttcggatgactttta-cctcaaaactgaatcaaaacgcactgcgaacacc 232  Q
    |||||||||||||||||||||||||  |||||||| ||| |||| ||||| |||||||||    
T  27507568 tatcttgcggttcggatgacttttattctcaaaaccgaaccaaaccgcaccgcgaacacc 27507627  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 36203520 - 36203579
Alignment:
Q  174 tatcttgcggttcggatgactttt-acctcaaaactgaatcaaaacgcactgcgaacacc 232  Q
    |||||||||||| ||||||||||| |||||||||| ||| |||| ||||| |||||||||    
T  36203520 tatcttgcggtttggatgacttttaacctcaaaaccgaaccaaatcgcaccgcgaacacc 36203579  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 12973565 - 12973501
Alignment:
Q  174 tatcttgcggttcggatgactttta-cctcaaaactgaatcaaaacgcactgcgaacacctctaa 237  Q
    ||||||||||||||||||||||| | | ||||||| ||| |||| ||||| ||||||||| ||||    
T  12973565 tatcttgcggttcggatgactttcagcttcaaaaccgaaccaaaccgcaccgcgaacacccctaa 12973501  T

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Target: scaffold0204 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 14528 - 14470
Alignment:
Q  174 tatcttgcggttcggatgactttt-acctcaaaactgaatcaaaacgcactgcgaacac 231  Q
    |||||||||||||||||||||||| || ||||||||||| |||| ||||| || |||||    
T  14528 tatcttgcggttcggatgacttttaacttcaaaactgaaccaaaccgcaccgcaaacac 14470  T

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Target: scaffold0688 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 1164 - 1107
Alignment:
Q  174 tatcttgcggttcggatgactttta-cctcaaaactgaatcaaaacgcactgcgaaca 230  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||| | || ||||||||    
T  1164 tatcttgcggttcggatgacttttagcctcaaaaccgaaccaaaccacattgcgaaca 1107  T

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Target: scaffold0688; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 7733 - 7676
Alignment:
Q  174 tatcttgcggttcggatgactttta-cctcaaaactgaatcaaaacgcactgcgaaca 230  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||| | || ||||||||    
T  7733 tatcttgcggttcggatgacttttagcctcaaaaccgaaccaaaccacattgcgaaca 7676  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 34087425 - 34087368
Alignment:
Q  174 tatcttgcggttcggatgactttta-cctcaaaactgaatcaaaacgcactgcgaaca 230  Q
    |||||||| |||| ||||| ||||| |||||||||||||||||| |||||| ||||||    
T  34087425 tatcttgcagttcagatgatttttaacctcaaaactgaatcaaaccgcactccgaaca 34087368  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 27572125 - 27572181
Alignment:
Q  177 cttgcggttcggatgactttt-acctcaaaactgaatcaaaacgcactgcgaacacc 232  Q
    ||||||||||||||||||||| |||||||||| ||| |||| ||||| || ||||||    
T  27572125 cttgcggttcggatgacttttaacctcaaaaccgaaccaaaccgcaccgcaaacacc 27572181  T

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