View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_high_12 (Length: 328)
Name: NF17616_high_12
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 32729293 - 32728987
Alignment:
| Q |
16 |
taatcaagagaatctcagccattgagatggtgcctagtactatacggacggttacaatatagttaaaggcagtaggatatgcacgacaaactttatttta |
115 |
Q |
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| T |
32729293 |
taatcaagagaatctcagccattgagatggtgcctagtactatacggacggttacaatatagttaaaggcagtaggatatgcacgacaaactttatttta |
32729194 |
T |
|
| Q |
116 |
acattttcgtttgatatagagagatagtgaagttcttgtatctcttgttcgtaatgtatcgtatgtgtggttaaaattaaacttttaaactaaacatagc |
215 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32729193 |
acattttcgtttgatatagaga--tagtgaagttcttgtatctcttgttcgtaatgtatcgtatgtgtggttaaaattaaacttttaaactaaacatagc |
32729096 |
T |
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| Q |
216 |
tttcattttgatgttttctatatgttgtgtgaggacatcgatcatcgtaattaataaataatttcaatcctcctcctatagtgcattgcaagatattttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
32729095 |
tttcattttgatgttttctatatgttgtgtgaggacatcgatcatcgtaattaataaataatatcaacactcctcctatagtgcattgcaagatattttt |
32728996 |
T |
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| Q |
316 |
atctctctc |
324 |
Q |
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||||||||| |
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| T |
32728995 |
atctctctc |
32728987 |
T |
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