View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_high_14 (Length: 314)
Name: NF17616_high_14
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 10132924 - 10133212
Alignment:
| Q |
8 |
ccaagaaaatctcatgtgaaattcctaacctattcttaaagtattgaaaaatatgcaagttccagagtcatgcatataaacacatgaaagcataaatttc |
107 |
Q |
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| T |
10132924 |
ccaaaaaaatctcatgtgaaattcctaacctattcttaaagtattgaaaaatatgcaagttccagagtcatgcatataaacacatgaaagcataaatttc |
10133023 |
T |
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| Q |
108 |
aaaatttaaatcatatatatactatagcatcaagacagaaagcaatagaagaaagaaaaaacaggaacatatgtatgatgataaagtatataccatgaga |
207 |
Q |
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| T |
10133024 |
aaattttaaatcatatatataccatagcatcaagacagaaagcaatagaagaaagaaaaaacaggaacatatgtatgatgataaagtatataccatgaga |
10133123 |
T |
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| Q |
208 |
gtgataaacgagtaagagcaaaagaaatggaatctctccaaccatgacaaacatgagaagccgtaatcaccatttgatcatccaaaagt |
296 |
Q |
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| T |
10133124 |
gtgataaacgagtgagagcaaaagaaatggaatctctccaaccatgacaaacatgagaagctgtaatcaccatttgatcatccaaaagt |
10133212 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 40693557 - 40693491
Alignment:
| Q |
194 |
tatataccatgagagtgataaacgagtaagagcaaaagaaatggaatctctccaaccatgacaaaca |
260 |
Q |
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||||||||| |||||||||||||||| ||| |||| |||| ||||||||||||||| |||||||| |
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| T |
40693557 |
tatataccaagagagtgataaacgagcaaggccaaagtaaatagaatctctccaaccacgacaaaca |
40693491 |
T |
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