View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_high_15 (Length: 294)
Name: NF17616_high_15
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 24497034 - 24496941
Alignment:
| Q |
47 |
ttaatgtcactctttatgtttctgccttgcaatgaattatggtgatattatatgaattttttgttatgttgatctgtatttgataactattgaa |
140 |
Q |
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| T |
24497034 |
ttaatgtcactctttatgtttctgccttgcaatgaattatggtgatattatatgtattttttgttatgttgatctgtatttgataactattgaa |
24496941 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 24496902 - 24496937
Alignment:
| Q |
198 |
tgagaaactagaaattgagaattcaattcaatgcca |
233 |
Q |
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| T |
24496902 |
tgagaaactagaaattgagaattcaattcaatgcca |
24496937 |
T |
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