View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_high_19 (Length: 255)
Name: NF17616_high_19
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 52142333 - 52142521
Alignment:
| Q |
18 |
aaaggtaggttttacatatgaagcaacaggagaggctatttatttatagacaaattcaaagagttgagcataattgcacaat----caattaaacagagg |
113 |
Q |
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| T |
52142333 |
aaaggtaggttttacatatgaagcaataggagaggctattcatttataggcaatttcgaagagttgagcataattgcacaatcaatcaattaaacagggg |
52142432 |
T |
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| Q |
114 |
aagagctatagaaagtaacttcctattaatgactatgagcttaaaatgtggaaagccagcaggccctttgcaatgaaaagtagattacaa |
203 |
Q |
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| T |
52142433 |
aaaagctatagaaagtaacttcctattaatgactatgagcttgaaatgtggaaagccagcaggccc-ttgcaatgaaaagtagattacaa |
52142521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 17522222 - 17522078
Alignment:
| Q |
45 |
aggagaggctatttatttatagacaaattcaaagagttgagcataattgcacaatcaattaaacagaggaagagctatagaaagtaacttcctattaatg |
144 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
17522222 |
aggagaggctattcatttatatgcaaattcaaagagttgagcataattgcagaataaattaaacagaggaagatctatagaaagtagcttcctattaatg |
17522123 |
T |
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| Q |
145 |
actatgagcttaaaatgtggaaagccagcaggccctttgcaatgaa |
190 |
Q |
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| T |
17522122 |
actacgagcttagaatgtggaaagccagcaggccc-ttgcaatgaa |
17522078 |
T |
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