View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17616_high_8 (Length: 354)

Name: NF17616_high_8
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17616_high_8
NF17616_high_8
[»] chr4 (10 HSPs)
chr4 (9-234)||(20978588-20978820)
chr4 (289-335)||(20976600-20976646)
chr4 (244-321)||(40932975-40933051)
chr4 (245-321)||(934482-934560)
chr4 (244-314)||(38903776-38903848)
chr4 (247-314)||(47147528-47147595)
chr4 (249-332)||(49738590-49738675)
chr4 (264-293)||(20977938-20977967)
chr4 (244-314)||(51841256-51841328)
chr4 (260-332)||(40018229-40018301)
[»] chr8 (3 HSPs)
chr8 (248-332)||(26055580-26055663)
chr8 (244-317)||(10108965-10109040)
chr8 (266-314)||(16715449-16715497)
[»] chr6 (1 HSPs)
chr6 (246-330)||(21870108-21870191)
[»] chr3 (5 HSPs)
chr3 (273-333)||(39535439-39535499)
chr3 (244-312)||(11284144-11284210)
chr3 (244-314)||(37598228-37598300)
chr3 (262-314)||(659697-659749)
chr3 (265-313)||(46367446-46367494)
[»] chr1 (4 HSPs)
chr1 (244-321)||(30396780-30396859)
chr1 (244-332)||(16822061-16822150)
chr1 (265-321)||(52482433-52482489)
chr1 (244-312)||(15577570-15577640)
[»] chr5 (3 HSPs)
chr5 (265-335)||(36123219-36123289)
chr5 (249-298)||(28005692-28005743)
chr5 (244-296)||(28186851-28186905)
[»] chr7 (4 HSPs)
chr7 (265-314)||(19262516-19262565)
chr7 (244-332)||(40830354-40830443)
chr7 (243-314)||(30914560-30914633)
chr7 (243-300)||(41483638-41483697)
[»] chr2 (3 HSPs)
chr2 (244-313)||(43832250-43832321)
chr2 (243-332)||(8197581-8197672)
chr2 (243-332)||(8202341-8202432)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 20978820 - 20978588
Alignment:
Q  9 aagcaaaggacaagtagactactattattattact-------attattgctactagtatctatcaaaaatttgcgtgtgttcagcaatttatagctagac 101  Q
    ||||||||||||||||||||||||||||||||| |       ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  20978820 aagcaaaggacaagtagactactattattattatttattagtattattgctaccagtatctatcaagaatttgcgtgtgttcagcaatttatagctagac 20978721  T
Q  102 ctgacctgtacaaaaacatctatgggatgaagatgatggagtaatcatcactttaaaatatttcaaccatgtacaaaaacatttcaatttcaactaaatg 201  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20978720 ctgacctgtacaaaaacatttatgggatgaagatgatggagtaatcaacactttaaaatatttcaaccatgtacaaaaacatttcaatttcaactaaatg 20978621  T
Q  202 tgtagacactaaattaaagtttacctttgataa 234  Q
    |||||||||||||||||||||||||||||||||    
T  20978620 tgtagacactaaattaaagtttacctttgataa 20978588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 20976646 - 20976600
Alignment:
Q  289 atatgatatatgactgaacattatggtggcgttcggtccatgtaatc 335  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  20976646 atatgatatatgactgaacattatggtggtgtttggtccatgtaatc 20976600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 321
Target Start/End: Complemental strand, 40933051 - 40932975
Alignment:
Q  244 aagagaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgtt 321  Q
    |||| ||||||||||| | | |||||||||||||||| |||| |||||||||||||||  ||||||||||| ||||||    
T  40933051 aagaaaaactattaaggg-tctagagattaatgagttggatagggatatgatatatgatagaacattatggcggcgtt 40932975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 321
Target Start/End: Complemental strand, 934560 - 934482
Alignment:
Q  245 agagaaactattaagagattt--agagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgtt 321  Q
    |||||||||||||||| | ||  ||||||||||||||| |||| || ||||||||||||  |||||||||||| |||||    
T  934560 agagaaactattaagaaagttctagagattaatgagttggatagggttatgatatatgatagaacattatggttgcgtt 934482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 38903848 - 38903776
Alignment:
Q  244 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatgg 314  Q
    |||||||||||||||||  ||  || ||||||||||||||||||  |||||||||||||||  ||||||||||    
T  38903848 aagagaaactattaagaaagacctaaagattaatgagtttgatagagatatgatatatgacataacattatgg 38903776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 47147528 - 47147595
Alignment:
Q  247 agaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatgg 314  Q
    ||||||||||||||  ||| |||||||||||||||| ||||  ||||||||||||||  |||||||||||    
T  47147528 agaaactattaagaaagatctagagattaatgagttggata--gatatgatatatgatagaacattatgg 47147595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 332
Target Start/End: Complemental strand, 49738675 - 49738590
Alignment:
Q  249 aaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgta 332  Q
    ||||||||||||  ||| |||| ||||||||||| |||| || || |||||||||| ||||||||||| || ||| | ||||||||    
T  49738675 aaactattaagaaggatctagaaattaatgagttggatagggttaggatatatgacagaacattatggcggtgtttgatccatgta 49738590  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 20977967 - 20977938
Alignment:
Q  264 ttagagattaatgagtttgatatggatatg 293  Q
    ||||||||||||||||||||||||||||||    
T  20977967 ttagagattaatgagtttgatatggatatg 20977938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 51841328 - 51841256
Alignment:
Q  244 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatgg 314  Q
    |||||||||||||||||  |||||||| ||| | ||||| |||| |||||||||||||||   ||||||||||    
T  51841328 aagagaaactattaagaaggatttagaaattcaagagttggatagggatatgatatatgatacaacattatgg 51841256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 40018301 - 40018229
Alignment:
Q  260 agatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgta 332  Q
    |||| ||||||| |||||||| |||| |||||||||||||||  |||||||| || | |||| | ||||||||    
T  40018301 agatctagagatcaatgagttggatagggatatgatatatgatagaacattacggcgtcgtttgatccatgta 40018229  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 26055580 - 26055663
Alignment:
Q  248 gaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgta 332  Q
    |||| ||||||| ||| |||||||||||||| | |||| || |||||||||||| ||||||||||| ||||||| | ||||||||    
T  26055580 gaaattattaag-gatctagagattaatgagatggataggggtatgatatatgattgaacattatgatggcgtttgatccatgta 26055663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 10108965 - 10109040
Alignment:
Q  244 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtgg 317  Q
    ||||||||||| |||||  ||| |||||||||| ||||||||||  |||||| |||||||  ||||||||||||||    
T  10108965 aagagaaactaataagaaagatctagagattaacgagtttgatagagatatgttatatgatagaacattatggtgg 10109040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 16715449 - 16715497
Alignment:
Q  266 agagattaatgagtttgatatggatatgatatatgactgaacattatgg 314  Q
    ||||||||||| |||||||| |||||||||||||||  |||||||||||    
T  16715449 agagattaatgggtttgatagggatatgatatatgatagaacattatgg 16715497  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 330
Target Start/End: Complemental strand, 21870191 - 21870108
Alignment:
Q  246 gagaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatg 330  Q
    |||||||||||||| ||| ||||||||||||||||  ||| ||||||||||||| | |||| |||||||| ||||| | ||||||    
T  21870191 gagaaactattaag-gatctagagattaatgagttatatagggatatgatatatcattgaatattatggttgcgtttgatccatg 21870108  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 39535499 - 39535439
Alignment:
Q  273 aatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaa 333  Q
    |||||||| |||| |||||||||||||||  |||||||||||||||||| | |||||||||    
T  39535499 aatgagttggataaggatatgatatatgatagaacattatggtggcgtttgatccatgtaa 39535439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 11284144 - 11284210
Alignment:
Q  244 aagagaaactattaagagatttagagattaatgagtttgatatggatatgatatatgactgaacattat 312  Q
    |||||||||||||||||  | |||||||||||||||| |||||  ||||| ||||||| ||||||||||    
T  11284144 aagagaaactattaaga--tgtagagattaatgagttggatataaatatggtatatgattgaacattat 11284210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 37598300 - 37598228
Alignment:
Q  244 aagagaaactattaagagattt--agagattaatgagtttgatatggatatgatatatgactgaacattatgg 314  Q
    ||||||||||||||||| || |  ||||||||||||||| |||| || ||||||||||||  |||||||||||    
T  37598300 aagagaaactattaagatatatctagagattaatgagttggataggggtatgatatatgatagaacattatgg 37598228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Original strand, 659697 - 659749
Alignment:
Q  262 atttagagattaatgagtttgatatggatatgatatatgactgaacattatgg 314  Q
    ||||| ||||||||||||| |||| |||||| ||||||||  |||||||||||    
T  659697 atttacagattaatgagttggatagggatattatatatgatagaacattatgg 659749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 46367494 - 46367446
Alignment:
Q  265 tagagattaatgagtttgatatggatatgatatatgactgaacattatg 313  Q
    ||||||| |||||||| |||| |||||||||||||||  ||||||||||    
T  46367494 tagagatgaatgagttggataaggatatgatatatgatagaacattatg 46367446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 321
Target Start/End: Complemental strand, 30396859 - 30396780
Alignment:
Q  244 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgtt 321  Q
    |||||||||| ||||||  |||  ||||||||||||||| |||| ||||| |||||||||  ||||||||||||||||||    
T  30396859 aagagaaactgttaagaaggatccagagattaatgagttggatagggatacgatatatgatagaacattatggtggcgtt 30396780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 332
Target Start/End: Complemental strand, 16822150 - 16822061
Alignment:
Q  244 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgta 332  Q
    ||||||||||| |||||  ||| |||||||||||||| | ||||  |||||||||||||| |||||||||||| ||| || ||||||||||    
T  16822150 aagagaaactagtaagaaagatgtagagattaatgagctggatagcgatatgatatatgattgaacattatggcggc-tttggtccatgta 16822061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 52482489 - 52482433
Alignment:
Q  265 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgtt 321  Q
    |||||||||||||||| || | |||||||||||||||  ||||||||||| ||||||    
T  52482489 tagagattaatgagttggacagggatatgatatatgatggaacattatggcggcgtt 52482433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 15577570 - 15577640
Alignment:
Q  244 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattat 312  Q
    |||||||||||||||||  ||| |||||||||||||||| ||||  |||||||||| |||  |||||||||    
T  15577570 aagagaaactattaagaaggatatagagattaatgagttggatagagatatgatatttgatagaacattat 15577640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 36123289 - 36123219
Alignment:
Q  265 tagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgtaatc 335  Q
    ||||||||||||||||   || || ||||||||||||  |||||||||||||||||| | |||||||||||    
T  36123289 tagagattaatgagttatgtaggggtatgatatatgatagaacattatggtggcgtttgatccatgtaatc 36123219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 28005692 - 28005743
Alignment:
Q  249 aaactattaaga--gatttagagattaatgagtttgatatggatatgatata 298  Q
    ||||||||||||  ||| ||||||||||||||||||||| ||||||||||||    
T  28005692 aaactattaagaaagatctagagattaatgagtttgatagggatatgatata 28005743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 28186905 - 28186851
Alignment:
Q  244 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgata 296  Q
    |||||||||||||||||  |||||||||||||||||||| ||||  |||||||||    
T  28186905 aagagaaactattaagaaagatttagagattaatgagttggatagagatatgata 28186851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 19262565 - 19262516
Alignment:
Q  265 tagagattaatgagtttgatatggatatgatatatgactgaacattatgg 314  Q
    |||||||||||||||| |||| |||||||||||||||  |||||||||||    
T  19262565 tagagattaatgagttggatagggatatgatatatgatagaacattatgg 19262516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 332
Target Start/End: Original strand, 40830354 - 40830443
Alignment:
Q  244 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgta 332  Q
    |||||||||||||||||  ||| |||| |||||||||||  ||||| |||||||||||||  |||||||| || |||||| | ||||||||    
T  40830354 aagagaaactattaagaaggatctagaaattaatgagttgtatatg-atatgatatatgatagaacattacggaggcgtttgatccatgta 40830443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 30914633 - 30914560
Alignment:
Q  243 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatgg 314  Q
    ||||||||||||| | ||  ||| |||||||||||||||| |||| |||||||||||||||  |||| ||||||    
T  30914633 gaagagaaactatcatgaaggatctagagattaatgagttggatagggatatgatatatgatagaactttatgg 30914560  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 41483638 - 41483697
Alignment:
Q  243 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatg 300  Q
    ||||||||||||||||||  ||| |||| ||||| ||||| ||||| |||||||||||||    
T  41483638 gaagagaaactattaagaaagatctagaaattaacgagttggatatagatatgatatatg 41483697  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 43832250 - 43832321
Alignment:
Q  244 aagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatg 313  Q
    |||||||||||||||||  ||| |||||||||||||||| |||| ||||||||| ||| |  ||||||||||    
T  43832250 aagagaaactattaagaaggatctagagattaatgagttggataaggatatgatgtattatagaacattatg 43832321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 8197672 - 8197581
Alignment:
Q  243 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgta 332  Q
    ||||||||||||||||||  ||| || ||||||||||||| ||||   |||||||||||||  ||| ||||||| | |||| | ||||||||    
T  8197672 gaagagaaactattaagaaagatctaaagattaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgta 8197581  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 8202432 - 8202341
Alignment:
Q  243 gaagagaaactattaaga--gatttagagattaatgagtttgatatggatatgatatatgactgaacattatggtggcgttcggtccatgta 332  Q
    ||||||||||||||||||  ||| || ||||||||||||| ||||   |||||||||||||  ||| ||||||| | |||| | ||||||||    
T  8202432 gaagagaaactattaagaaagatctaaagattaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgta 8202341  T

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