View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17616_low_11 (Length: 344)
Name: NF17616_low_11
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_low_11 |
 | |
|
| [»] chr5 (21 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0627 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 8529672 - 8529342
Alignment:
| Q |
14 |
cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8529672 |
cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtc |
8529573 |
T |
|
| Q |
114 |
acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529572 |
acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat |
8529473 |
T |
|
| Q |
214 |
ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529472 |
ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg |
8529373 |
T |
|
| Q |
314 |
gagaaatgttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8529372 |
gagaaatgttgaagtggatcctcaaatttct |
8529342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 15 - 344
Target Start/End: Complemental strand, 8536235 - 8535906
Alignment:
| Q |
15 |
agagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtca |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536235 |
agagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtca |
8536136 |
T |
|
| Q |
115 |
cgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaata |
214 |
Q |
| |
|
| |||||||| ||||||||||||||||||| | | ||| || ||| ||||||| || ||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8536135 |
ctggggagtttataagacttcctgaatctattgcggatcaaaatcgggtaagaaggctaggacaagctggttttggtttccaacctaaaactaatgaata |
8536036 |
T |
|
| Q |
215 |
taaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctgg |
314 |
Q |
| |
|
|||||| |||| | ||||| | ||||||||||||| ||||||| ||||| |||||||||| ||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
8536035 |
taaggtgataaacatgtgggtgagacatgttaaacgtgccaatgtgtgggagtttgagcgtttgacccttgagataaacacacttggaaccccatcctgg |
8535936 |
T |
|
| Q |
315 |
agaaatgttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8535935 |
agaaatgttgaagtggatcctcaaatttct |
8535906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 344
Target Start/End: Original strand, 1599679 - 1600001
Alignment:
| Q |
22 |
ttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacggggga |
121 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
1599679 |
ttgataagtttaatattgtgaattcttgcaatggtttactttgtttgtctgacccatatttcggaaacccattagtgatctgcaacccaatcactgggga |
1599778 |
T |
|
| Q |
122 |
gttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggta |
221 |
Q |
| |
|
|||||||||||||||||||||||| | |||| |||||| ||| ||| |||||| | ||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1599779 |
gttcataagacttcctgaatctaccgcgaatcaaactcgggtaggaaggcaaggacgagctgcttttggtttccaacctaaaactaatgaatataaggtg |
1599878 |
T |
|
| Q |
222 |
ataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatg |
321 |
Q |
| |
|
|||| | || || | ||| ||||||||| ||||||| || || |||| || ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1599879 |
ataaacatgagggtgagatatgttaaacgtgccaatgcgttggagtttaagattgtgatccttgagataaacacacttggaacaccatcctggagaaatg |
1599978 |
T |
|
| Q |
322 |
ttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1599979 |
ttgaagtggatcctcaaatttct |
1600001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 23 - 344
Target Start/End: Original strand, 9074118 - 9074427
Alignment:
| Q |
23 |
tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
9074118 |
tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgaaccaactaccggaaacccttcagtgatctgcaacccagtcacaggggag |
9074217 |
T |
|
| Q |
123 |
ttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaa |
222 |
Q |
| |
|
|||||||||||||||||| |||| || ||||||||||| ||||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9074218 |
ttcataagacttcctgaagctaccacgaatcgaactcgggtaagaatggtaggacaagttggttttggattccaacctaatactaatgaatataaggtaa |
9074317 |
T |
|
| Q |
223 |
taagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgt |
322 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||| ||| |||||||||||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
9074318 |
taagaatgtggataagacatggtaaacgtgccaa------------tgaccgtgtgatccttcagataaacacacttggaacaacaatattgagaaatgt |
9074405 |
T |
|
| Q |
323 |
tgaagtggatcctcaaatttct |
344 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9074406 |
tgaagtggatcctcaaatttct |
9074427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 168 - 344
Target Start/End: Complemental strand, 8637454 - 8637278
Alignment:
| Q |
168 |
atgcaaggtcaagctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgt |
267 |
Q |
| |
|
|||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||| | ||| || ||||||||| | ||||| ||||||| |
|
|
| T |
8637454 |
atgcgaggacaagttggttttggtttccaacctaaaactaatgaatataaggtgataagaatatggggcagtgatgttaaacgaggcaatcgttgggtgt |
8637355 |
T |
|
| Q |
268 |
ttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
|||| ||| || ||||||||||| | |||||||||||| |||| |||||||||| |||||||||||| ||||||||| |
|
|
| T |
8637354 |
ttgatcgtatggtccttgagatatatacacttggaacaccatcatggagaaatgctgaagtggatccccaaatttct |
8637278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 27 - 344
Target Start/End: Original strand, 2856268 - 2856588
Alignment:
| Q |
27 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca |
126 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| ||||| ||||| | |||| ||| |||||||| ||||||||||| ||| |||| || | |
|
|
| T |
2856268 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattta |
2856367 |
T |
|
| Q |
127 |
taagacttcctgaatctactacaaat-cgaactcgagtaagaatgcaaggt--caagctggttttggattccaacctaaaactaatgaatataaggtaat |
223 |
Q |
| |
|
|| |||||||||| |||||| | | | ||| | ||| | ||| || |||||||||||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
2856368 |
caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtacaagctggttttggtttccaacccaaaactaatgaatataaggtgat |
2856467 |
T |
|
| Q |
224 |
aagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgtt |
323 |
Q |
| |
|
| |||||| | | |||||| || | ||||| | ||||||||||||||| | || |||||| |||| || |||||| |||| |||||||||||| |
|
|
| T |
2856468 |
cataatgtggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagtgctcgagatacacacgctcggaacatcatcatggagaaatgtt |
2856567 |
T |
|
| Q |
324 |
gaagtggatcctcaaatttct |
344 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2856568 |
gaagtggatcctcaaatttct |
2856588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 27 - 344
Target Start/End: Original strand, 2904384 - 2904704
Alignment:
| Q |
27 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca |
126 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| ||||| ||||| |||| ||| |||| ||| ||||||||||| ||| |||| |||| |
|
|
| T |
2904384 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctaccggaagccctttagcgatttgcaacccagtaacgagggaattca |
2904483 |
T |
|
| Q |
127 |
taagacttcctgaatctactacaaat-cgaactcgagtaagaatgcaaggt--caagctggttttggattccaacctaaaactaatgaatataaggtaat |
223 |
Q |
| |
|
|| |||||||||| |||||| | | | ||| | ||| | ||| || |||||||||||||| |||||||| |||||||||||||||||||| || |
|
|
| T |
2904484 |
caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtgcaagctggttttggtttccaacccaaaactaatgaatataaggtgat |
2904583 |
T |
|
| Q |
224 |
aagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgtt |
323 |
Q |
| |
|
|| |||||| | |||||||| || ||||| | | |||||| |||||| | | ||||||||| |||| || ||||||||||| ||||||||| || |
|
|
| T |
2904584 |
aataatgtggaataaacatgttagacgggccaacgatttggtgttcgagcgtctagtgcttgagatacacacgctcggaacaacatcatggagaaatctt |
2904683 |
T |
|
| Q |
324 |
gaagtggatcctcaaatttct |
344 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2904684 |
gaagtggatcctcaaatttct |
2904704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 263 - 344
Target Start/End: Complemental strand, 8641866 - 8641785
Alignment:
| Q |
263 |
ggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
8641866 |
ggtgtttgagcgtgtgatccttgagataaacacacttggagcaccatcatggagaaatgttgaagtggatcctcagatttct |
8641785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 8547470 - 8547588
Alignment:
| Q |
30 |
tttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttcataa |
129 |
Q |
| |
|
|||||||||||||||||||||| ||| || |||||||||||||| ||| || |||||||| |||||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
8547470 |
tttgatattgtgaattcttgcagtggcttgctttgtttgtctgaaccaactaccggaaaccctttagtgatctgcaatccaatcacaggggagttcataa |
8547569 |
T |
|
| Q |
130 |
gacttcctgaatctactac |
148 |
Q |
| |
|
|||||| |||| ||||||| |
|
|
| T |
8547570 |
gacttcttgaagctactac |
8547588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 344
Target Start/End: Original strand, 2873878 - 2874198
Alignment:
| Q |
27 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca |
126 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| ||||| ||||| | |||| ||| |||||||| ||||||||||| ||| |||| |||| |
|
|
| T |
2873878 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca |
2873977 |
T |
|
| Q |
127 |
taagacttcctgaatctactac-aaatcgaactcgagtaagaatgcaagg--tcaagctggttttggattccaacctaaaactaatgaatataaggtaat |
223 |
Q |
| |
|
|| |||||||||| |||||| | || ||| | ||| | ||| || |||||||||||| | |||||||| |||||||||||||||||||| || |
|
|
| T |
2873978 |
caatacttcctgaacttactacgacttctgactggtttaacagtgctcgggtacaagctggttttagtttccaacccaaaactaatgaatataaggtgat |
2874077 |
T |
|
| Q |
224 |
aagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgtt |
323 |
Q |
| |
|
| | |||| | | |||||| || | ||||| | ||||||||||||||| | || |||||| |||| || |||||| |||| |||||||||||| |
|
|
| T |
2874078 |
cataatatggaacaaatatgttagacgagacaatcgtttggtgtttgagcgtgtagtgctcgagatacacacgctcggaacaccatcatggagaaatgtt |
2874177 |
T |
|
| Q |
324 |
gaagtggatcctcaaatttct |
344 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2874178 |
gaagtggatcctcaaatttct |
2874198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 344
Target Start/End: Original strand, 2844594 - 2844761
Alignment:
| Q |
177 |
caagctggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtg |
276 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||| || | |||||| | | |||||| || ||||| | |||||||||||||| |
|
|
| T |
2844594 |
caagctggttttggtttccaacccaaaactaatgaatataaggtgatcataatgtggaacaaatatgttagacgaaacaatcgtttggtgtttgagcgtg |
2844693 |
T |
|
| Q |
277 |
tgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
| | || |||||| |||| ||||||||| |||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
2844694 |
tagtgctcgagatacacacgcttggaacaccatcatggagaaaggttgaagtggatcctcaaatttct |
2844761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 182 - 338
Target Start/End: Complemental strand, 9004028 - 9003874
Alignment:
| Q |
182 |
tggttttggattccaacctaaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatc |
281 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||| |||| | |||| |||||||||| | || |||| | | ||||||||||||| |||| |
|
|
| T |
9004028 |
tggttttggttatcaacctaaaactaatgattataaggtgataaaaatatggacgagacatgttagaggtgacaataactttgtgtttgagcgtgcgatc |
9003929 |
T |
|
| Q |
282 |
cttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaa |
338 |
Q |
| |
|
||||||||| |||||| |||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
9003928 |
cttgagata--cacactgggaacaccatcatggagaaatgttgaagtggatcctcaa |
9003874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 8644687 - 8644623
Alignment:
| Q |
280 |
tccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
8644687 |
tccttgagataaacacacttggaacaccatcatggagaaatgctgaagtagatcctcaaatttct |
8644623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 8678304 - 8678225
Alignment:
| Q |
266 |
gtttgagcgtgtgatccttgagataaacacacttggaa-caacatcctggagaaatgttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| |||||| || |||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
8678304 |
gtttgatcgtatgatccttgagataaacacaattggaaacaccatcatggagaaatgctgaagtggatcctcaaatttct |
8678225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 2844435 - 2844548
Alignment:
| Q |
27 |
aagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttca |
126 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||||| ||||| ||||| | |||| ||| |||||||| ||||||||||| ||| |||| |||| |
|
|
| T |
2844435 |
aagtttggcattgtgaattcttgcaatggcttgctttgtttatctgaaacatctatcggaagccctttagtgatttgcaacccagtaacgagggaattca |
2844534 |
T |
|
| Q |
127 |
taagacttcctgaa |
140 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
2844535 |
caatacttcctgaa |
2844548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 8644956 - 8644833
Alignment:
| Q |
23 |
tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag |
122 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| || ||||||||| | | |||| | |||| |||||||| || ||||| |||||||| |||||| |
|
|
| T |
8644956 |
tgataagtttggtgttgtgaattcttgcaatggcttgctttgtttgcgtcatccatttgaaggaagaccattagtaatttgcaatccagtcactggggag |
8644857 |
T |
|
| Q |
123 |
ttcataagacttcctgaatctact |
146 |
Q |
| |
|
|| |||||||||||| || ||||| |
|
|
| T |
8644856 |
tttataagacttcctaaagctact |
8644833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 344
Target Start/End: Complemental strand, 3380943 - 3380862
Alignment:
| Q |
263 |
ggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
|||||| |||||||| | ||||||||| |||| | ||||||||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
3380943 |
ggtgttcgagcgtgtagtgcttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatcctcaaatttct |
3380862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 8644787 - 8644747
Alignment:
| Q |
180 |
gctggttttggattccaacctaaaactaatgaatataaggt |
220 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8644787 |
gctgcttttggcttccaacctaaaactaatgaatataaggt |
8644747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 11354043 - 11354082
Alignment:
| Q |
187 |
ttggattccaacctaaaactaatgaatataaggtaataag |
226 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11354043 |
ttggcttccaacctaaaactaatgaatataaggtgataag |
11354082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 11373350 - 11373311
Alignment:
| Q |
187 |
ttggattccaacctaaaactaatgaatataaggtaataag |
226 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11373350 |
ttggcttccaacctaaaactaatgaatataaggtgataag |
11373311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 9004132 - 9004088
Alignment:
| Q |
93 |
ttagtgatctgcaacccagtcacgggggagttcataagacttcct |
137 |
Q |
| |
|
|||||| | |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
9004132 |
ttagtggtatgcaacccagtcactggggaattcataagacttcct |
9004088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 9443833 - 9443503
Alignment:
| Q |
14 |
cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9443833 |
cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccaatagtgatctgcaacccagtc |
9443734 |
T |
|
| Q |
114 |
acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443733 |
acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat |
9443634 |
T |
|
| Q |
214 |
ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443633 |
ataaggtaataagcgtgtggataagacatgttaaacaagccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg |
9443534 |
T |
|
| Q |
314 |
gagaaatgttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
9443533 |
gagaaatgttgaagtggatcctcaaatttct |
9443503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 344
Target Start/End: Original strand, 48361223 - 48361553
Alignment:
| Q |
14 |
cagagatattgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtc |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
48361223 |
cagagattttgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgatccatctttgggaaacccgttagtgatctgcaacccagtc |
48361322 |
T |
|
| Q |
114 |
acgggggagttcataagacttcctgaatctactacaaatcgaactcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaat |
213 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48361323 |
acaggggagttcataagacttcctgaatctactgcgtatcgaactcgggtaagaatgcaaggacaagctggttttggtttccaacctaaaactaatgaat |
48361422 |
T |
|
| Q |
214 |
ataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctg |
313 |
Q |
| |
|
||||||| |||| | ||||| | ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48361423 |
ataaggtgataaacatgtgggtgagacatgttaaacgtgccaatgcgtgggagtttgagcgtgtgatccttgagataaacacacttggaacaccatcctg |
48361522 |
T |
|
| Q |
314 |
gagaaatgttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
||| |||||||||||||||||||| |||||| |
|
|
| T |
48361523 |
gaggaatgttgaagtggatcctcacatttct |
48361553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 34 - 336
Target Start/End: Complemental strand, 35780544 - 35780226
Alignment:
| Q |
34 |
atattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaa-cccattagtgatctgcaacccagtcacgggggagttcataagac |
132 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||| | |||| | | ||| ||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35780544 |
atattgtcaattcttgcaatggtttgctttgtttgtctaatccatataccgaaaaaccctttagtgatttgcaacccagtcacgggggagttcataagac |
35780445 |
T |
|
| Q |
133 |
ttcctgaatctactacaaatc------ga------ac---tcgagtaagaatgcaaggtcaagctggttttggattccaacctaaaactaatgaatataa |
217 |
Q |
| |
|
|||||||| ||||||| | || || || |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35780444 |
ttcctgaagctactacgactcctttaagattaaatacggatcgagtaagaatgcaaggacaagctggttttggtttccaacctaaaactaatgaatataa |
35780345 |
T |
|
| Q |
218 |
ggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggaga |
317 |
Q |
| |
|
||| |||| | ||||||||||||||| ||| ||||||| | ||||||||||| ||||| ||||| || ||||||||||||||| || |||| |||||| |
|
|
| T |
35780344 |
ggtgataaaaatatggataagacatgttcaacgtgccaatgattgggtgtttgatcgtgttatcctcgaaataaacacacttggagcaccatcatggaga |
35780245 |
T |
|
| Q |
318 |
aatgttgaagtggatcctc |
336 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
35780244 |
actgttgaagtggatcctc |
35780226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 16717108 - 16716982
Alignment:
| Q |
23 |
tgataagtttgatattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggag |
122 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||| || || ||||||||||| ||| || ||||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
16717108 |
tgataagtttaatattgtgaattcatgtaatggcttgctatgtttgtctgaaccaactactggaaaccctatagtgatctgcaacccattcatgggggaa |
16717009 |
T |
|
| Q |
123 |
ttcataagacttcctgaatctactaca |
149 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
16717008 |
ttcataagacttcctgaaactactaca |
16716982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 200 - 344
Target Start/End: Complemental strand, 5131316 - 5131172
Alignment:
| Q |
200 |
taaaactaatgaatataaggtaataagcgtgtggataagacatgttaaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacactt |
299 |
Q |
| |
|
||||||||||||||||||||| |||| | ||| |||| |||||||||| |||| || |||| ||||||||||||||||||||||||| |||| ||| |
|
|
| T |
5131316 |
taaaactaatgaatataaggtgataaaaatatgggtaaggcatgttaaacgtgccgttcgttgggagtttgagcgtgtgatccttgagatacacactctt |
5131217 |
T |
|
| Q |
300 |
ggaacaacatcctggagaaatgttgaagtggatcctcaaatttct |
344 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||| |||||| |
|
|
| T |
5131216 |
ggaacattgtcatggagaaatgttgaagtggatcttcagatttct |
5131172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 245 - 323
Target Start/End: Original strand, 26324109 - 26324187
Alignment:
| Q |
245 |
taaacatgccaatcagtgggtgtttgagcgtgtgatccttgagataaacacacttggaacaacatcctggagaaatgtt |
323 |
Q |
| |
|
||||| ||| ||||| ||||| ||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||| |
|
|
| T |
26324109 |
taaacgtgctaatcaatgggtttttgagcgtgtgatccttgggatgaacacacttggaacaccgtcctggagaaatgtt |
26324187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 5398 - 5293
Alignment:
| Q |
35 |
tattgtgaattcttgcaatggtttactttgtttgtctgacccatcttttggaaacccattagtgatctgcaacccagtcacgggggagttcataagactt |
134 |
Q |
| |
|
|||||||||||| || ||||| || || ||||||||| | ||| || |||||||| |||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
5398 |
tattgtgaattcctgtaatggcttgctatgtttgtctcaaccaactaccggaaaccctttagtgatctgcaacccattcatgggggagttcataagactt |
5299 |
T |
|
| Q |
135 |
cctgaa |
140 |
Q |
| |
|
|||||| |
|
|
| T |
5298 |
cctgaa |
5293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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