View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_low_13 (Length: 315)
Name: NF17616_low_13
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_low_13 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 33071473 - 33071159
Alignment:
| Q |
1 |
ccctgcagtatttaagccatttaccccctaagannnnnnnngttaatgatcatgttggttagaaaccttaagttaaatgagatgataaattcaaacctga |
100 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33071473 |
ccctgcagtatttaagacatttaccccctaagattttttttgttaatgatcatgttggtgagaaaccttaagttaaatgagatgataaattcaaacctga |
33071374 |
T |
|
| Q |
101 |
taagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagcaaactcatgtttgatcgtaggactactgctaaacagccga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33071373 |
taagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagcaaactcatgtttgattgtaggactactgctaaacagccga |
33071274 |
T |
|
| Q |
201 |
atccatatatcatgaccaaaaacaatcatcaaagcaaaacagaaaccaaggaggatagagaactttagactgaatctcattgcatgtttgactctttctg |
300 |
Q |
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||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |
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| T |
33071273 |
atccatataccatgaccaaatacaatcatcaacgcaaaacagaatccaaggaggatagagagctttagactgactctcattgcatgtttggctctttctg |
33071174 |
T |
|
| Q |
301 |
gttgtcctgccccaa |
315 |
Q |
| |
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|||| |||||||||| |
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| T |
33071173 |
gttggcctgccccaa |
33071159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 33081165 - 33080849
Alignment:
| Q |
1 |
ccctgcagtatttaagccatttaccccctaagannnnnnnn--gttaatgatcatgttggttagaaaccttaagttaaatgagatgataaattcaaacct |
98 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33081165 |
ccctgcagtatttaagacatttaccccctaagattttttttttgttaatgatcatgttggtgagaaaccttaagttaaatgagatgataaattcaaacct |
33081066 |
T |
|
| Q |
99 |
gataagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagcaaactcatgtttgatcgtaggactactgctaaacagcc |
198 |
Q |
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| T |
33081065 |
gataagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagcaaactcatgtttgatcgtaggactactgctaaacagcc |
33080966 |
T |
|
| Q |
199 |
gaatccatatatcatgaccaaaaacaatcatcaaagcaaaacagaaaccaaggaggatagagaactttagactgaatctcattgcatgtttgactctttc |
298 |
Q |
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||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |
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| T |
33080965 |
gaatccatataccatgaccaaatacaatcatcaacgcaaaacagaatccaaggaggatagagagctttagactgactctcattgcatgtttggctctttc |
33080866 |
T |
|
| Q |
299 |
tggttgtcctgccccaa |
315 |
Q |
| |
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|||||| |||||||||| |
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| T |
33080865 |
tggttggcctgccccaa |
33080849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 61 - 298
Target Start/End: Complemental strand, 33089744 - 33089507
Alignment:
| Q |
61 |
agaaaccttaagttaaatgagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagc |
160 |
Q |
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||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| |
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| T |
33089744 |
agaaagcttaatttaaaatatatgataaattcaaacctgataagacaccttggacagaatctagtagtatggaagtagcaaggaagggtgatattgaagc |
33089645 |
T |
|
| Q |
161 |
aaactcatgtttgatcgtaggactactgctaaacagccgaatccatatatcatgaccaaaaacaatcatcaaagcaaaacagaaaccaaggaggatagag |
260 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| |
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| T |
33089644 |
aaacttatgtttgatcgtaggactactgctaaacatccgaatccatatatcatgaccaaatacaatcatcaaagcaaaacagaaaccaaggacgacagag |
33089545 |
T |
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| Q |
261 |
aactttagactgaatctcattgcatgtttgactctttc |
298 |
Q |
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| T |
33089544 |
agctttaatgtgactctcattgcatgttttgctctttc |
33089507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 61 - 298
Target Start/End: Complemental strand, 33097240 - 33097003
Alignment:
| Q |
61 |
agaaaccttaagttaaatgagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagc |
160 |
Q |
| |
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||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| |
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| T |
33097240 |
agaaagcttaatttaaaatatatgataaattcaaacctgataagacaccttggacagaatctagtagtatggaagtagcaaggaagggtgatattgaagc |
33097141 |
T |
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| Q |
161 |
aaactcatgtttgatcgtaggactactgctaaacagccgaatccatatatcatgaccaaaaacaatcatcaaagcaaaacagaaaccaaggaggatagag |
260 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| |
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| T |
33097140 |
aaacttatgtttgatcgtaggactactgctaaacatccgaatccatatatcatgaccaaatacaatcatcaaagcaaaacagaaaccaaggacgacagag |
33097041 |
T |
|
| Q |
261 |
aactttagactgaatctcattgcatgtttgactctttc |
298 |
Q |
| |
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| T |
33097040 |
agctttaatgtgactctcattgcatgttttgctctttc |
33097003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 61 - 310
Target Start/End: Complemental strand, 33063660 - 33063411
Alignment:
| Q |
61 |
agaaaccttaagttaaatgagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagc |
160 |
Q |
| |
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||||| ||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| |
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| T |
33063660 |
agaaagcttaacctaaaagagatgaggaatttaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaagcaagggtgtcactgaagc |
33063561 |
T |
|
| Q |
161 |
aaactcatgtttgatcgtaggactactgctaaacagccgaatccatatatcatgaccaaaaacaatcatcaaagcaaaacagaaaccaaggaggatagag |
260 |
Q |
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|||||| | |||||| | |||||| ||||| ||| |||||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||| |||| |
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| T |
33063560 |
aaactcctttttgataatgggactatcactaaaaagctgaatccatatatcatgaccaaatacaagcatcaaaacaaaacataaaccaaggaggagagag |
33063461 |
T |
|
| Q |
261 |
aactttagactgaatctcattgcatgtttgactctttctggttgtcctgc |
310 |
Q |
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| ||||| | ||| || |||||||||||| |||||||| |||| ||||| |
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| T |
33063460 |
agctttaaagtgactcccattgcatgttttgctctttcttgttggcctgc |
33063411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 67 - 289
Target Start/End: Complemental strand, 33049684 - 33049461
Alignment:
| Q |
67 |
cttaagttaaat-gagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagcaaact |
165 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||||||||||||| |
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| T |
33049684 |
cttaagttaaaaagagatgaggaattcaaacctgataagacaccttggacagaatctagtagtatggaaatagcaagcaaaggtgttattgaagcaaact |
33049585 |
T |
|
| Q |
166 |
catgtttgatcgtaggactactgctaaacagccgaatccatatatcatgaccaaaaacaatcatcaaagcaaaacagaaaccaaggaggatagagaactt |
265 |
Q |
| |
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| | |||||| |||||||| ||||||| |||||||||||||||||||||| | || ||||||| ||||||| || |||||||||| ||| | ||| |
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| T |
33049584 |
cctctttgataataggactatcactaaacatttgaatccatatatcatgaccaaacaaaagcatcaaaacaaaacaaaatccaaggaggacagatagctt |
33049485 |
T |
|
| Q |
266 |
tagactgaatctcattgcatgttt |
289 |
Q |
| |
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|||| ||| ||||||||||||||| |
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|
| T |
33049484 |
tagagtgactctcattgcatgttt |
33049461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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