View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17616_low_17 (Length: 281)
Name: NF17616_low_17
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 45142374 - 45142125
Alignment:
| Q |
12 |
cacagacacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactat |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142374 |
cacacacacaaaataaaagattacagaaagtaaagatgaaaacacgatgtttggatcaatttgaatcctacatcctcactgaggtcgatctcatcactat |
45142275 |
T |
|
| Q |
112 |
gatcaagaattacaaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45142274 |
gatcaagaattacaaggctttcctttctaatagtaggaacgcattccaaatttacaacaaacttagaaacagaatgtaggatatttatcacattccaaat |
45142175 |
T |
|
| Q |
212 |
tggaccgcttattttttaatagtagtaggaacacaactattaataacaga |
261 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45142174 |
tggaccacttattttttaatagtagtaggcacacaactattaataacaga |
45142125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 34530943 - 34530995
Alignment:
| Q |
56 |
cgatgtttggatcaa-tttgaatcctacatcctcactgaggtcgatctcatca |
107 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34530943 |
cgatatttggatcaactttgaatcctacatcctcgttgaggtcgatctcatca |
34530995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 118
Target Start/End: Original strand, 29361452 - 29361487
Alignment:
| Q |
83 |
atcctcactgaggtcgatctcatcactatgatcaag |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29361452 |
atcctcactgaggtcgatcccatcactatgatcaag |
29361487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 30270658 - 30270623
Alignment:
| Q |
83 |
atcctcactgaggtcgatctcatcactatgatcaag |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30270658 |
atcctcactgaggtcgatcccatcactatgatcaag |
30270623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University