View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_low_18 (Length: 269)
Name: NF17616_low_18
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 42806393 - 42806626
Alignment:
| Q |
13 |
cagatttatatggtggcgataacatcaaactattcacttattggacaatggattcacaattcgattgccctgttttgttctttcttttaattcattataa |
112 |
Q |
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| T |
42806393 |
cagatttatatggtggcgataacatcaaactattcacttattggacagtggattctcaattcgattgccccattttgttctttcttttaattcattataa |
42806492 |
T |
|
| Q |
113 |
taacttgattaattactttgatagattgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatcaatgatataggta |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42806493 |
taacttgattaattactttgatagattgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatc---gatataggtc |
42806589 |
T |
|
| Q |
213 |
tgggagcaagcatcttcccactttctaaccatgcttc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
42806590 |
tgggagcaagcatcttcccactttctaaccatgcttc |
42806626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 42763638 - 42763875
Alignment:
| Q |
13 |
cagatttatatggtggcgataacatcaaactattcacttattggacaatggattcacaattcgattgccctgttttgttctttcttttaattcattataa |
112 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
42763638 |
cagatttatatggtgacgataacatcaaactattcacttattggacaatggattctcaattcgattgccccgctttgttctttcttttaattcattataa |
42763737 |
T |
|
| Q |
113 |
taacttgattaattactttgatagattgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatcaatgatataggta |
212 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763738 |
---cttgtctaattactttgatagattgatgcatatcaagcaatgggttggtataacctcccttgctctggctttattcaaattatcaatgatataggta |
42763834 |
T |
|
| Q |
213 |
tgggagcaagcatcttcccactttctaaccatgcttcatcc |
253 |
Q |
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| T |
42763835 |
tgggagcaagcatcttcccactttctaaccatgcttcatcc |
42763875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 33049612 - 33049845
Alignment:
| Q |
13 |
cagatttatatggtggcgataacatcaaactattcacttattggacaatggattcacaattcgattgccctgttttgttctttcttttaattcattataa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33049612 |
cagatttatatggtggcgataacatcaaactattcacttattagacaatggattctcaattcgattgccccgttttgttctttcttttaattcattataa |
33049711 |
T |
|
| Q |
113 |
taacttgattaattactttgatagattgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatcaatgatataggta |
212 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33049712 |
taacttgtttaattactttgatagattgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatc---gatataggtc |
33049808 |
T |
|
| Q |
213 |
tgggagcaagcatcttcccactttctaaccatgcttc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
33049809 |
tgggagcaagcatcttcccactttctaaccatgcttc |
33049845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 26429933 - 26429831
Alignment:
| Q |
139 |
tgatgcatatcaagcaatgggatggtataacctcccttgctctggctttattcaaattatcaatgatataggtatgggagcaagcatcttcccactttct |
238 |
Q |
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||||||||||||||||| || || ||||| |||| ||| ||||||||||||||||||| ||||| ||||| | |||||||| || | |||||||||| |
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| T |
26429933 |
tgatgcatatcaagcaactggttgttataatctcctttgttctggctttattcaaattaacaatggtatagcccttggagcaagtatatccccactttct |
26429834 |
T |
|
| Q |
239 |
aac |
241 |
Q |
| |
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||| |
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|
| T |
26429833 |
aac |
26429831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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