View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17616_low_2 (Length: 445)

Name: NF17616_low_2
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17616_low_2
NF17616_low_2
[»] chr7 (7 HSPs)
chr7 (7-197)||(46170119-46170313)
chr7 (273-435)||(8039251-8039413)
chr7 (274-418)||(42574855-42574999)
chr7 (273-329)||(19336942-19336998)
chr7 (233-278)||(46170031-46170079)
chr7 (273-329)||(44712434-44712490)
chr7 (282-343)||(24578704-24578765)
[»] chr2 (4 HSPs)
chr2 (276-419)||(14294887-14295030)
chr2 (273-387)||(27546939-27547050)
chr2 (273-332)||(31484367-31484426)
chr2 (273-329)||(10927232-10927288)
[»] chr4 (3 HSPs)
chr4 (273-422)||(4216152-4216301)
chr4 (278-422)||(3797033-3797177)
chr4 (273-350)||(21880742-21880819)
[»] chr1 (2 HSPs)
chr1 (278-424)||(21545217-21545363)
chr1 (277-343)||(7330150-7330216)
[»] scaffold0026 (1 HSPs)
scaffold0026 (333-419)||(69946-70032)
[»] chr5 (5 HSPs)
chr5 (273-383)||(11848076-11848186)
chr5 (273-329)||(31056930-31056986)
chr5 (273-324)||(31042951-31043002)
chr5 (282-348)||(21941424-21941490)
chr5 (281-326)||(20534770-20534815)
[»] chr3 (2 HSPs)
chr3 (276-389)||(13423449-13423562)
chr3 (273-341)||(45295026-45295094)
[»] chr8 (1 HSPs)
chr8 (273-329)||(26674263-26674319)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 46170313 - 46170119
Alignment:
Q  7 tgagatgaagccaatgatcaacaaaggtcattcacaaattatgacatcaaggtactactatacaacttccattttatttatttatgtgctc----tcnnn 102  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||    |        
T  46170313 tgagatgaagccaatgatcgacaaagatcattcacaaattatgacatcaaggtactactatacaacttccattttttttgtttatgtcctcttttttttt 46170214  T
Q  103 nnnnncatcttctaccaatgaannnnnnnctatacaaagagaggaaattgaaaagacacatgatgaagatggtgatcaataataacagtgttaag 197  Q
         |||||||||||||||||       ||||| |||||| |||||||||||||||||| |||| | |||||||||||||||||||||||||||    
T  46170213 tttttcatcttctaccaatgaatttttttctatagaaagagtggaaattgaaaagacacaggatgcatatggtgatcaataataacagtgttaag 46170119  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 435
Target Start/End: Original strand, 8039251 - 8039413
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatg 372  Q
    ||||||| |||||||| ||||||| |||||| |||| ||||||||||||||| |||||  | ||||||||| |||| | || |||| || || |||||||    
T  8039251 atgacaatcattttataatgatatctttgaaagatgattgtccaattcctcccacttccgttctatggagacaacatcatcaacaagacacaaaaaaatg 8039350  T
Q  373 ggatgaaagatatgtcgatagtatgattgtctttaatgtactaagtcgggtggtaggtgatga 435  Q
    ||||||||||||||||  |||  |||||  ||||||||  |||||||||| || |||| ||||    
T  8039351 ggatgaaagatatgtccgtagagtgatttcctttaatgagctaagtcgggcggcaggttatga 8039413  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 418
Target Start/End: Original strand, 42574855 - 42574999
Alignment:
Q  274 tgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatgg 373  Q
    ||||||||||||||||||| ||||| | || ||||  |||||||||||||| |||||  |  |||| ||| |||||||  ||||| ||| | |||| |||    
T  42574855 tgacaaccattttatgatggtatatctaaaggatgactgtccaattcctcccacttccgttatatgcagacaacaccgcggacaaaacgtataaaagtgg 42574954  T
Q  374 gatgaaagatatgtcgatagtatgattgtctttaatgtactaagt 418  Q
    |||||||||||||| | ||  ||||||  |||||||| |||||||    
T  42574955 gatgaaagatatgttggtatgatgattagctttaatgaactaagt 42574999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 19336998 - 19336942
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaactt 329  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||||| |||| ||||    
T  19336998 atgacaaccattttatgataatatttttgaatgatgattgtccaatttctcccactt 19336942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 46170079 - 46170031
Alignment:
Q  233 acaaattattgt---cttcaacttcaataaacatacaaatatgatgaca 278  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||    
T  46170079 acaaattattgtcttcttcaacttcaataaacatacaaatatgatgaca 46170031  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 44712434 - 44712490
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaactt 329  Q
    ||||||||||||| ||||| ||| ||||||| |||| ||||||||||||||| ||||    
T  44712434 atgacaaccatttcatgataatacatttgaaggatgattgtccaattcctcccactt 44712490  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 24578765 - 24578704
Alignment:
Q  282 attttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggaga 343  Q
    ||||||||||  ||||| ||||||||| ||||||||||||||| | ||  ||||||||||||    
T  24578765 attttatgattgtatatatgaatgatgattgtccaattcctcccaatttcatgctatggaga 24578704  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 14294887 - 14295030
Alignment:
Q  276 acaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatggga 375  Q
    |||||||||||||||||||||||||||| |||| || |||||||||| | |||||| ||||||||||| ||||  ||||| || | ||| ||||||||||    
T  14294887 acaaccattttatgatgatatatttgaaggatggttatccaattccttccacttctgtgctatggagacaacattgtcgagaatatgcaaaaaaatggga 14294986  T
Q  376 tgaaagatatgtcgatagtatgattgtctttaatgtactaagtc 419  Q
    |||||||||||||| ||| ||||||| |  ||||| ||||||||    
T  14294987 tgaaagatatgtcggtagaatgattgccaataatggactaagtc 14295030  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 273 - 387
Target Start/End: Original strand, 27546939 - 27547050
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatg 372  Q
    |||||||||||||||||||| | ||||||||  ||| ||||||||||||||| |||    |||||||||||||||||| | ||||| || | ||||||||    
T  27546939 atgacaaccattttatgatggtgtatttgaagaatggttgtccaattcctcccact--cgtgctatggagataacacc-ttgacaagacactgaaaaatg 27547035  T
Q  373 ggatgaaagatatgt 387  Q
    |||||||||||||||    
T  27547036 ggatgaaagatatgt 27547050  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 332
Target Start/End: Original strand, 31484367 - 31484426
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttcta 332  Q
    ||||||||||||||||||| ||||||||||| | || ||||||||||||||| |||||||    
T  31484367 atgacaaccattttatgattatatatttgaaggttggttgtccaattcctcccacttcta 31484426  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 10927232 - 10927288
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaactt 329  Q
    |||| |||||||||||||| ||||||||||| |||| ||||| ||||||||| ||||    
T  10927232 atgaaaaccattttatgataatatatttgaaggatggttgtcaaattcctcccactt 10927288  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 273 - 422
Target Start/End: Original strand, 4216152 - 4216301
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatg 372  Q
    |||| ||||||||||||||| |||||||||  |||| ||||||||||||||| |||||  ||||||||| | |||| |||| | || | ||| |   |||    
T  4216152 atgataaccattttatgatggtatatttgacggatgattgtccaattcctcccacttccgtgctatggaaacaacatcgtcaagaagatgcaaagtcatg 4216251  T
Q  373 ggatgaaagatatgtcgatagtatgattgtctttaatgtactaagtcggg 422  Q
    ||||||||||||||||||||| ||||||| || ||||| |||||||||||    
T  4216252 ggatgaaagatatgtcgatagaatgattgcctataatgaactaagtcggg 4216301  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 3797033 - 3797177
Alignment:
Q  278 aaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatgggatg 377  Q
    ||||||||||||||| ||||| |||  |||| ||||||||||||||| |||||  ||||||||| | |||| |||| | || | ||| |   ||||||||    
T  3797033 aaccattttatgatggtatatatgacggatgattgtccaattcctcccacttccctgctatggaaacaacatcgtcaagaagatgcaaagtcatgggatg 3797132  T
Q  378 aaagatatgtcgatagtatgattgtctttaatgtactaagtcggg 422  Q
    |||||||||||||||| |||||||||| ||||| |||||||||||    
T  3797133 aaagatatgtcgatagaatgattgtctataatgaactaagtcggg 3797177  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 350
Target Start/End: Complemental strand, 21880819 - 21880742
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacacc 350  Q
    ||||||||||||||||||| |||||||| || |||| |||||||||| || | ||||| |||||| || || ||||||    
T  21880819 atgacaaccattttatgataatatatttaaaagatgattgtccaattgctgccacttccatgctacggggacaacacc 21880742  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 278 - 424
Target Start/End: Original strand, 21545217 - 21545363
Alignment:
Q  278 aaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatgggatg 377  Q
    |||||||||||||||||||||||||  |||| ||||||| ||||||| |||||  ||||||||||| |||||||| |  || | ||| |   ||| ||||    
T  21545217 aaccattttatgatgatatatttgatggatggttgtccatttcctcccacttccgtgctatggagacaacaccgtagcaaaaatgcaaagtcatgagatg 21545316  T
Q  378 aaagatatgtcgatagtatgattgtctttaatgtactaagtcgggtg 424  Q
    |||||||| | | ||| |||||||||||||||| |||||||| ||||    
T  21545317 aaagatatattggtaggatgattgtctttaatgaactaagtcaggtg 21545363  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 343
Target Start/End: Original strand, 7330150 - 7330216
Alignment:
Q  277 caaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggaga 343  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||||||||  |||||||||||    
T  7330150 caaccattttatgatgatatatttgaagaatggttgtccaattcctccaacttccgtgctatggaga 7330216  T

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Target: scaffold0026 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 419
Target Start/End: Complemental strand, 70032 - 69946
Alignment:
Q  333 tgctatggagataacaccgtcgacaacacgcagaaaaatgggatgaaagatatgtcgatagtatgattgtctttaatgtactaagtc 419  Q
    |||||||||||  ||||||| ||||| |||||||||||||||||||||||||||||  ||| ||| ||| |||||||| ||||||||    
T  70032 tgctatggagactacaccgttgacaagacgcagaaaaatgggatgaaagatatgtcagtaggatggttgcctttaatgaactaagtc 69946  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 383
Target Start/End: Complemental strand, 11848186 - 11848076
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatg 372  Q
    |||||||||||||||| ||| | |||||||| |||| ||||||||||||||| | ||| |||||||||||| |||   ||||| || | ||| |||||||    
T  11848186 atgacaaccattttattatggtttatttgaaggatggttgtccaattcctcctatttccatgctatggagacaactttgtcgagaagatgcaaaaaaatg 11848087  T
Q  373 ggatgaaagat 383  Q
    |||||||||||    
T  11848086 ggatgaaagat 11848076  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 31056986 - 31056930
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaactt 329  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||    
T  31056986 atgacaaccattttatgataatatatttgaatgatggttgtccaattcctcccactt 31056930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 31043002 - 31042951
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctcc 324  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||||||    
T  31043002 atgacaaccattttatgataatatatttgaatgatggttttccaattcctcc 31042951  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 21941424 - 21941490
Alignment:
Q  282 attttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataaca 348  Q
    ||||||||||| ||||||||||  ||| ||||||||||||||  |||||  ||||||||||| ||||    
T  21941424 attttatgatggtatatttgaagaatggttgtccaattcctctgacttccgtgctatggagacaaca 21941490  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 326
Target Start/End: Original strand, 20534770 - 20534815
Alignment:
Q  281 cattttatgatgatatatttgaatgatgtttgtccaattcctccaa 326  Q
    |||||||||||| |||||||||  |||| |||||||||||||||||    
T  20534770 cattttatgatggtatatttgagggatggttgtccaattcctccaa 20534815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 389
Target Start/End: Complemental strand, 13423562 - 13423449
Alignment:
Q  276 acaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatggagataacaccgtcgacaacacgcagaaaaatggga 375  Q
    ||||||||||||||||| |||||||||| |||  |||||||||| || | | || | | ||||||| | |||||||| ||||| |  || ||||||||||    
T  13423562 acaaccattttatgatggtatatttgaaggatagttgtccaatttcttccaattatgttctatggaaacaacaccgttgacaagaaacataaaaatggga 13423463  T
Q  376 tgaaagatatgtcg 389  Q
    | ||||||||||||    
T  13423462 taaaagatatgtcg 13423449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 45295094 - 45295026
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaacttctatgctatgga 341  Q
    ||||||||||||| |||| ||||||||||||||||  ||||| ||||||||| |||||  |||||||||    
T  45295094 atgacaaccatttgatgaagatatatttgaatgattgttgtcaaattcctcccacttccctgctatgga 45295026  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 26674319 - 26674263
Alignment:
Q  273 atgacaaccattttatgatgatatatttgaatgatgtttgtccaattcctccaactt 329  Q
    ||||||||||||||||||| |||||||| || |||| ||||||||||||||| ||||    
T  26674319 atgacaaccattttatgataatatatttaaaggatggttgtccaattcctcccactt 26674263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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