View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_low_20 (Length: 250)
Name: NF17616_low_20
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 4 - 245
Target Start/End: Complemental strand, 33080667 - 33080426
Alignment:
| Q |
4 |
tttaacgatcaagatctcctgactatgtgctttcctagactataggaaatttaggtctagaagggaatatgcaaaaatgccggtaaaggagagtatgtta |
103 |
Q |
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| T |
33080667 |
tttaacgatcaagatctcctgactgtgtgctttcctagactataggaaatttaggtctagaagggaatatgcaaaaatgctggtaaaggagagtatgtta |
33080568 |
T |
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| Q |
104 |
acatagactaactaaccttgcggctgcactaagaccgtaagtgatcaggcaagcgatgaattctgtgtttgcactgcataatttttagttttgaagaatt |
203 |
Q |
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| T |
33080567 |
acatagactaactaaccttgcggctgcactaagaccataagtgatcaggcaagcgatgaattctgtgtttgcactgcataatttttagttttgaagaatt |
33080468 |
T |
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| Q |
204 |
acaatagtggatcatgtgaatatttattctcttcatctcagt |
245 |
Q |
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| T |
33080467 |
acaatagtggatcatgtgaatatttattctcttcatttcagt |
33080426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 33070979 - 33070734
Alignment:
| Q |
1 |
tcatttaacgatcaagatctcctgactatgtgctttcctagactataggaaatttaggtctagaagggaatatgcaaaaatgccggtaaaggagagtatg |
100 |
Q |
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| T |
33070979 |
tcatttaacgatcaagatctcttgactatgtgctttcctagactataggaaatttaggtctagaagggaatatacaaaaatgtcggcaaaagagagtatg |
33070880 |
T |
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| Q |
101 |
ttaacatagactaactaaccttgcggctgcactaagaccgtaagtgatcaggcaagcgatgaattctgtgtttgcactgcataatttttag-ttttgaag |
199 |
Q |
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| T |
33070879 |
ttaacgtagaccaactaaccttgcggctgcactaagaccataaatgatcaggtaagcggtgagttctgtgtttgcactgcacaatttttagtttttgaag |
33070780 |
T |
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| Q |
200 |
aattacaatagtggatcatgtgaatatttattctcttcatctcagt |
245 |
Q |
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| T |
33070779 |
aattacaatagtgaatcatatgaatatttattatctacatttcagt |
33070734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 33089038 - 33088948
Alignment:
| Q |
92 |
gagagtatgttaacatagactaactaaccttgcggctgcactaagaccgtaagtgatcaggcaagcgatgaattctgtgtttgcactgcat |
182 |
Q |
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| T |
33089038 |
gagagtatgttaacttagactaactaaccttgcagctgcactaagaccataagtgatcatgtaagcaatgaattctgtgttcgcactgcat |
33088948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 33096534 - 33096444
Alignment:
| Q |
92 |
gagagtatgttaacatagactaactaaccttgcggctgcactaagaccgtaagtgatcaggcaagcgatgaattctgtgtttgcactgcat |
182 |
Q |
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| T |
33096534 |
gagagtatgttaacttagactaactaaccttgcagctgcactaagaccataagtgatcatgtaagcaatgaattctgtgttcgcactgcat |
33096444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 33049325 - 33049241
Alignment:
| Q |
97 |
tatgttaacatagactaactaaccttgcggctgcactaagaccgtaagtgatcaggcaagcgatgaattctgtgtttgcactgca |
181 |
Q |
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| T |
33049325 |
tatgttaacttagaccaactaaccttgcagctgcactaagaccataagtgatcatgtaagcaatgaattctgtgttttcactgca |
33049241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 33063162 - 33063017
Alignment:
| Q |
34 |
tttcctagactataggaaatttaggtctagaagggaatatgcaaaaatgccggtaaaggagagtatgttaacatagactaactaaccttgcggctgcact |
133 |
Q |
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|||| ||||||||||||||| ||||| | |||| ||||||| ||||||| |||| ||| |||||| ||||| ||||||||||| |||||||| |
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| T |
33063162 |
tttcttagactataggaaatccaggtcgaaaaggatttatgcaacaatgccgcgaaag---agtgtgttaaagtagaccgactaaccttgcagctgcact |
33063066 |
T |
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| Q |
134 |
aagaccgtaagtgatcaggcaagcgatgaattctgtgtttgcactgcat |
182 |
Q |
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|||||| |||||||||| | |||| |||||||||||||| ||||||||| |
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| T |
33063065 |
aagaccataagtgatcatgtaagcaatgaattctgtgttcgcactgcat |
33063017 |
T |
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