View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_low_23 (Length: 237)
Name: NF17616_low_23
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 30725537 - 30725319
Alignment:
| Q |
4 |
ttgttcgacaatcagctgcaaactgtatagaatcccaaataactctgccataatgttgtttctgtcgcagcacataattgataacttcgtgaatacgtaa |
103 |
Q |
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| T |
30725537 |
ttgttcgacaatcagctgcaaactgtatagaatcccaaataactctgccataatgttgtttctgtcgcagcacataattgataacttggtgaattcgtaa |
30725438 |
T |
|
| Q |
104 |
ggtgcctcatgtatctttcagaattgaaaagaatggctcctctagcaaacctaaatcaagcatcgcaatctttcgagaactttcaagctccaaatgattg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30725437 |
ggtgcctcatgtatctttcagaattgaaaagaatggctcctctagcaaacctaaatcaagcatcgcaatctttcgagaactttcaagctccaaatgattg |
30725338 |
T |
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| Q |
204 |
agaaaattctgttatgcat |
222 |
Q |
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||||||||||||||||||| |
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| T |
30725337 |
agaaaattctgttatgcat |
30725319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 23675284 - 23675326
Alignment:
| Q |
181 |
aactttcaagctccaaatgattgagaaaattctgttatgcatg |
223 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
23675284 |
aacttccaagctccaaatgattgagaaaattttgttatgcatg |
23675326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 23859527 - 23859485
Alignment:
| Q |
181 |
aactttcaagctccaaatgattgagaaaattctgttatgcatg |
223 |
Q |
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||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
23859527 |
aacttccaagctccaaatgattgagaaaattttgttatgcatg |
23859485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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