View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17616_low_24 (Length: 231)

Name: NF17616_low_24
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17616_low_24
NF17616_low_24
[»] chr2 (15 HSPs)
chr2 (79-139)||(7724416-7724476)
chr2 (77-139)||(31603223-31603285)
chr2 (77-139)||(41319730-41319792)
chr2 (77-139)||(10333384-10333446)
chr2 (77-139)||(40471931-40471993)
chr2 (77-139)||(41437027-41437089)
chr2 (77-139)||(42754161-42754223)
chr2 (77-130)||(4137604-4137657)
chr2 (77-139)||(5096443-5096505)
chr2 (77-130)||(38963990-38964043)
chr2 (77-139)||(1748978-1749040)
chr2 (77-139)||(11277729-11277791)
chr2 (80-133)||(8373632-8373685)
chr2 (77-139)||(20917733-20917795)
chr2 (78-139)||(16333675-16333736)
[»] scaffold0221 (1 HSPs)
scaffold0221 (77-139)||(5571-5633)
[»] chr8 (15 HSPs)
chr8 (77-139)||(761745-761807)
chr8 (77-139)||(14378491-14378553)
chr8 (77-139)||(21132732-21132794)
chr8 (77-139)||(38842358-38842420)
chr8 (77-139)||(23437617-23437679)
chr8 (77-133)||(25691407-25691463)
chr8 (77-139)||(23547263-23547325)
chr8 (77-139)||(28583106-28583168)
chr8 (77-139)||(29708756-29708818)
chr8 (77-139)||(30464627-30464689)
chr8 (77-129)||(4326933-4326985)
chr8 (77-139)||(44887519-44887581)
chr8 (77-114)||(15870370-15870407)
chr8 (77-132)||(44040020-44040075)
chr8 (77-133)||(42149960-42150016)
[»] chr7 (10 HSPs)
chr7 (77-139)||(36820071-36820133)
chr7 (77-139)||(38069246-38069308)
chr7 (77-133)||(32345596-32345652)
chr7 (77-133)||(35693643-35693699)
chr7 (77-139)||(16806953-16807015)
chr7 (77-139)||(40232422-40232484)
chr7 (78-133)||(35265646-35265701)
chr7 (77-139)||(27621102-27621164)
chr7 (80-132)||(30462035-30462087)
chr7 (77-132)||(25273831-25273886)
[»] chr6 (16 HSPs)
chr6 (77-139)||(6142318-6142380)
chr6 (77-139)||(16969574-16969636)
chr6 (80-139)||(2397968-2398027)
chr6 (77-132)||(17496146-17496201)
chr6 (77-139)||(995758-995820)
chr6 (77-139)||(2667136-2667198)
chr6 (77-139)||(6188467-6188529)
chr6 (77-139)||(2913092-2913154)
chr6 (77-139)||(29514838-29514900)
chr6 (77-138)||(9023035-9023096)
chr6 (77-139)||(2141763-2141825)
chr6 (77-139)||(24798357-24798419)
chr6 (80-128)||(2656492-2656540)
chr6 (77-132)||(30699456-30699512)
chr6 (77-139)||(24825360-24825422)
chr6 (77-139)||(35117471-35117533)
[»] chr5 (18 HSPs)
chr5 (77-139)||(14057903-14057965)
chr5 (78-139)||(20040222-20040283)
chr5 (77-139)||(1780952-1781014)
chr5 (77-139)||(9936695-9936757)
chr5 (77-139)||(14607365-14607427)
chr5 (77-139)||(20023055-20023117)
chr5 (77-139)||(30721492-30721554)
chr5 (77-139)||(31190984-31191046)
chr5 (77-128)||(1831545-1831596)
chr5 (77-128)||(40317012-40317063)
chr5 (77-131)||(14633202-14633256)
chr5 (77-139)||(19344506-19344568)
chr5 (77-128)||(41410478-41410529)
chr5 (77-139)||(41262936-41262998)
chr5 (77-138)||(1098370-1098431)
chr5 (77-136)||(13548408-13548467)
chr5 (77-133)||(30351884-30351940)
chr5 (77-123)||(30211564-30211610)
[»] chr4 (18 HSPs)
chr4 (77-139)||(46608409-46608471)
chr4 (77-139)||(48380951-48381013)
chr4 (77-133)||(28914563-28914619)
chr4 (77-133)||(39332642-39332698)
chr4 (77-139)||(3708448-3708510)
chr4 (77-139)||(31152856-31152918)
chr4 (77-139)||(43447360-43447422)
chr4 (77-133)||(55631687-55631743)
chr4 (77-139)||(8525222-8525284)
chr4 (77-139)||(10385043-10385105)
chr4 (77-139)||(40411414-40411476)
chr4 (77-139)||(48652667-48652729)
chr4 (77-139)||(39171153-39171215)
chr4 (77-139)||(43047582-43047644)
chr4 (77-128)||(37667591-37667642)
chr4 (77-139)||(51306040-51306102)
chr4 (77-138)||(37164212-37164273)
chr4 (77-133)||(29821245-29821301)
[»] chr3 (22 HSPs)
chr3 (77-139)||(34555346-34555408)
chr3 (77-139)||(42098429-42098491)
chr3 (77-133)||(29720590-29720646)
chr3 (77-139)||(29455510-29455572)
chr3 (77-138)||(900891-900952)
chr3 (77-133)||(16434665-16434721)
chr3 (77-139)||(34263506-34263568)
chr3 (77-139)||(46866538-46866600)
chr3 (77-133)||(29793186-29793242)
chr3 (77-139)||(12948235-12948297)
chr3 (77-139)||(34669803-34669865)
chr3 (77-139)||(50673872-50673934)
chr3 (77-139)||(53274797-53274859)
chr3 (77-130)||(9484791-9484844)
chr3 (77-132)||(48927611-48927666)
chr3 (77-139)||(14750862-14750924)
chr3 (77-139)||(20144724-20144786)
chr3 (77-139)||(49076228-49076290)
chr3 (78-139)||(29444855-29444916)
chr3 (77-133)||(12250498-12250554)
chr3 (77-138)||(38878281-38878342)
chr3 (77-133)||(38833521-38833577)
[»] chr1 (16 HSPs)
chr1 (77-138)||(45299514-45299575)
chr1 (77-139)||(5606202-5606264)
chr1 (77-138)||(7075142-7075203)
chr1 (77-139)||(10100324-10100386)
chr1 (77-139)||(10124304-10124366)
chr1 (77-139)||(44741538-44741600)
chr1 (77-139)||(2138840-2138902)
chr1 (77-139)||(8250654-8250716)
chr1 (77-139)||(26544063-26544125)
chr1 (77-133)||(52749476-52749532)
chr1 (77-139)||(23393427-23393489)
chr1 (77-139)||(31651712-31651774)
chr1 (80-138)||(36035884-36035942)
chr1 (77-139)||(5945960-5946022)
chr1 (77-139)||(6017260-6017322)
chr1 (77-129)||(1821450-1821502)
[»] scaffold0001 (1 HSPs)
scaffold0001 (77-139)||(184161-184223)


Alignment Details
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 7724476 - 7724416
Alignment:
Q  79 caaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  7724476 caaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacagaggg 7724416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 31603285 - 31603223
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  31603285 ctcaaaattacgcattggtatgcctaattgggtcaactgtgtcacttattaagggacggaggg 31603223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 41319792 - 41319730
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  41319792 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 41319730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 10333446 - 10333384
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | || |||||||||||||||||||||||||||| |||||    
T  10333446 ctcaaaattacgcattggtatgcgtaatcgggtcaactgtgtcacttattaagggacggaggg 10333384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 40471931 - 40471993
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||||    
T  40471931 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcatttattaagggacggaggg 40471993  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 41437027 - 41437089
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||    
T  41437027 ctcaaaattacgcattggtatgcgtaaatgggtcaactgtgtcacttattaagggacggaggg 41437089  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 42754223 - 42754161
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  42754223 ctcaaaattacacattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 42754161  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 4137604 - 4137657
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagg 130  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  4137604 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagg 4137657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 5096443 - 5096505
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||| |||||    
T  5096443 ctcaaaattacgcattggtatgcgtaattgaatcaactgtgtcacttattaagggacggaggg 5096505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 38963990 - 38964043
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagg 130  Q
    ||||||||||| ||||||||||| | |||| |||||||||||||||||||||||    
T  38963990 ctcaaaattacacattggtatgcgtaattgagtcaactgtgtcacttattaagg 38964043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 1749040 - 1748978
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||| | | ||||||||||||  |||||||||||| |||| |||||    
T  1749040 ctcaaaattacgcattggtatacgtaattgggtcaactaggtcacttattaaaggacggaggg 1748978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 11277729 - 11277791
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | |||   |||||||| |||||||||||||||| |||||    
T  11277729 ctcaaaattacgcattggtatgcgtaatttcatcaactgtatcacttattaagggacggaggg 11277791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 8373632 - 8373685
Alignment:
Q  80 aaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    |||||||| ||||| ||| | | |||||||||||||||||||||||||||||||    
T  8373632 aaaattacacattgatatacgtaattgggtcaactgtgtcacttattaagggac 8373685  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 20917795 - 20917733
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||| ||||| | ||||| ||||||  |||| |||||||||||| |||||    
T  20917795 ctcaaaattacgcattgatatgcgtaattggatcaactaggtcatttattaagggacggaggg 20917733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 16333675 - 16333736
Alignment:
Q  78 tcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||| |||||||||||| | ||| |||||||||| |||  ||||||| |||||||||    
T  16333675 tcaaaattatgcattggtatgcgtaattaggtcaactgtctcatgtattaagagacagaggg 16333736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 5571 - 5633
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  5571 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 5633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 761745 - 761807
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  761745 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 761807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 14378553 - 14378491
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  14378553 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 14378491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 21132794 - 21132732
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  21132794 ctcaaaattatgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 21132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 38842358 - 38842420
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| |||||    
T  38842358 ctcaaaattacgcattggtatgcgtaattgggtcaactgtatcacttattaagggacggaggg 38842420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 23437679 - 23437617
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||| |||||    
T  23437679 ctcaaaattacgcattggtatgcgtcattgaatcaactgtgtcacttattaagggacggaggg 23437617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 25691463 - 25691407
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||||    
T  25691463 ctcaaaattacacattggtatgcataattgggtcaactatgttacttattaagggac 25691407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 23547263 - 23547325
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | |||  ||||||||||||||||||||||| || |||||    
T  23547263 ctcaaaattacgcattggtatgcgtaattaagtcaactgtgtcacttattaaggaacggaggg 23547325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 28583168 - 28583106
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | | ||||||||||||||||  ||||||||||| |||||    
T  28583168 ctcaaaattacgcattggtatgcgtaactgggtcaactgtgtcatgtattaagggacggaggg 28583106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 29708756 - 29708818
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | |||| |||||||  ||||||||||||||||| |||||    
T  29708756 ctcaaaattacgcattggtatgcgtaattgagtcaactaggtcacttattaagggacggaggg 29708818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 30464627 - 30464689
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||| ||||| ||||| | ||| ||||||||||||||||||||||||||| |||||    
T  30464627 ctcaaaattacacattgatatgcgtaatttggtcaactgtgtcacttattaagggacggaggg 30464689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 4326985 - 4326933
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaag 129  Q
    ||||||||||| ||||| ||||| | |||||||||||||||||||||||||||    
T  4326985 ctcaaaattacacattgatatgcgtaattgggtcaactgtgtcacttattaag 4326933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 44887581 - 44887519
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||| |||||||||||| | || ||||||||||||||| |||||| ||||| |||||    
T  44887581 ctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatttattatgggacggaggg 44887519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 15870370 - 15870407
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaact 114  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  15870370 ctcaaaattacgcattggtatgcataattgggtcaact 15870407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 44040020 - 44040075
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaaggga 132  Q
    |||||||||| |||||||||||| | || ||||||||||||||| |||||| ||||    
T  44040020 ctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatttattatggga 44040075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 42150016 - 42149960
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    |||||||||||||||| ||||||   ||||||||||||  |||||||||||| ||||    
T  42150016 ctcaaaattacgcatttgtatgcgaaattgggtcaactaggtcacttattaaaggac 42149960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 36820071 - 36820133
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  36820071 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 36820133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 38069246 - 38069308
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||    
T  38069246 ctcaaaattacgcattgatatgcgtaattgggtcaactgtgtcacttattaagggactgaggg 38069308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 32345652 - 32345596
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  32345652 ctcaaaattacgcattggtatgcgtaattgagtcaactgtgtcacttattaagggac 32345596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 35693699 - 35693643
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  35693699 ctcaaaattacgcattgatatgcgtaattgggtcaactgtgtcacttattaagggac 35693643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 16807015 - 16806953
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||||||||| ||| |||||    
T  16807015 ctcaaaattatgcattggtatgcgtaattgggtcaactgtgtcacttattaagtgacggaggg 16806953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 40232422 - 40232484
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||| |||||    
T  40232422 ctcaaaattacacattgatatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 40232484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 35265701 - 35265646
Alignment:
Q  78 tcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||| |||||| | ||||| |||||||||||||||||||||||||    
T  35265701 tcaaaattacgcattagtatgcgtaattggatcaactgtgtcacttattaagggac 35265646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 27621164 - 27621102
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||||||||| |||||| | ||||| ||||||||||| ||||||||||||| |||||    
T  27621164 ctcaaaattacgcattagtatgcgtaattggatcaactgtgtcgcttattaagggacggaggg 27621102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 30462087 - 30462035
Alignment:
Q  80 aaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaaggga 132  Q
    |||||||||||||||||| ||| ||||| |||||||| |||||||||||||||    
T  30462087 aaaattacgcattggtatacataattggatcaactgtatcacttattaaggga 30462035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 25273886 - 25273831
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaaggga 132  Q
    ||||||||||||||||| ||||| | ||||| |||| |||||||||||||||||||    
T  25273886 ctcaaaattacgcattgatatgcgtaattggatcaattgtgtcacttattaaggga 25273831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 6142380 - 6142318
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  6142380 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 6142318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 16969574 - 16969636
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  16969574 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 16969636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 2397968 - 2398027
Alignment:
Q  80 aaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  2397968 aaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 2398027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 17496201 - 17496146
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaaggga 132  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  17496201 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaaggga 17496146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 995758 - 995820
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  995758 ctcaaaattactcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 995820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 2667198 - 2667136
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||||    
T  2667198 ctcaaaattacgcattggtatgcgtaattaggtcaactgtgtcacttattaagggacggaggg 2667136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 6188529 - 6188467
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||| || |||||    
T  6188529 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaaggaacggaggg 6188467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 2913092 - 2913154
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||  ||||||||||||||||| |||||    
T  2913092 ctcaaaattacgcattggtatgcgtaattgggtcaactaggtcacttattaagggacggaggg 2913154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 29514900 - 29514838
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||| ||||| | |||||||||| |||||||||||||||||||| |||||    
T  29514900 ctcaaaattacgcattgatatgcgtaattgggtcaattgtgtcacttattaagggacggaggg 29514838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 9023035 - 9023096
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagagg 138  Q
    ||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||| ||||    
T  9023035 ctcaaaattacgcattggtatgcgtaattggatcaactgtgtcacttgttaagggacggagg 9023096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 2141763 - 2141825
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||| | | |||||||||||||||||| |||||||| ||| |||||    
T  2141763 ctcaaaattacgcattggtatacgtaattgggtcaactgtgtcatttattaagagacggaggg 2141825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 24798419 - 24798357
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||  |||||||||||||||||||||| || |||||    
T  24798419 ctcaaaattacgcattggtatgcgtaattgaatcaactgtgtcacttattaaggaacggaggg 24798357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 2656540 - 2656492
Alignment:
Q  80 aaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaa 128  Q
    |||||||||||||||||||| | ||| ||||||||||||||||||||||    
T  2656540 aaaattacgcattggtatgcgtaatttggtcaactgtgtcacttattaa 2656492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 30699456 - 30699512
Alignment:
Q  77 ctcaaaattacgcattgg-tatgcatgattgggtcaactgtgtcacttattaaggga 132  Q
    |||||||||||||||||| ||| | | ||| ||||||||||||||||||||||||||    
T  30699456 ctcaaaattacgcattgggtatacgtaatttggtcaactgtgtcacttattaaggga 30699512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 24825360 - 24825422
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||| ||||| ||||| | |||| ||||||||  |||||||||||||||| |||||    
T  24825360 ctcaaaattacacattgatatgcgtaattgagtcaactggatcacttattaagggacggaggg 24825422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 35117471 - 35117533
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||| ||||| |||||| | ||||||||||||||||||  ||||||| ||| |||||    
T  35117471 ctcaaaattatgcattagtatgcgtaattgggtcaactgtgtcatgtattaagtgacggaggg 35117533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 14057903 - 14057965
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||    
T  14057903 ctcaaaattacgcattggtatgcataattgggtcaattgtgtcacttattaagggacggaggg 14057965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 20040283 - 20040222
Alignment:
Q  78 tcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  20040283 tcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 20040222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 1781014 - 1780952
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||  | ||||||||||||||||||||||||||||||| |||||    
T  1781014 ctcaaaattacgcattggtatgagtaattgggtcaactgtgtcacttattaagggacggaggg 1780952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 9936757 - 9936695
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||    
T  9936757 ctcaaaattacgcattgatatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 9936695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 14607427 - 14607365
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| |||||    
T  14607427 ctcaaaattacgcattagtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 14607365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 20023055 - 20023117
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| |||||    
T  20023055 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattgagggacggaggg 20023117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 30721554 - 30721492
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  30721554 ctcaaatttacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 30721492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 31191046 - 31190984
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||||||||||||| |||||    
T  31191046 ctcaaaattacgcattggtatgcgtaattgggtcaactgtatcacttattaagggacggaggg 31190984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 1831545 - 1831596
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaa 128  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  1831545 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaa 1831596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 40317012 - 40317063
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaa 128  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  40317012 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaa 40317063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 14633202 - 14633256
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaaggg 131  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  14633202 ctcaaaattacgcattggtatgcgtaattaggtcaactgtgtcacttattaaggg 14633256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 19344568 - 19344506
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | |||||||||||||||||| |||||||| ||| |||||    
T  19344568 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcatttattaagagacggaggg 19344506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 41410529 - 41410478
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaa 128  Q
    ||||||||||||||||||||| | | ||||||||||||||||||||||||||    
T  41410529 ctcaaaattacgcattggtatacgtaattgggtcaactgtgtcacttattaa 41410478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 41262998 - 41262936
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||| |||||||||||||||| | |||||||||| |||||||||||||||| ||| |||||    
T  41262998 ctcaaatttacgcattggtatgcgtaattgggtcaattgtgtcacttattaagagacggaggg 41262936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 1098370 - 1098431
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagagg 138  Q
    ||||||||||||||||||||||| | ||||||||||||  ||||||| ||||||||| ||||    
T  1098370 ctcaaaattacgcattggtatgcgtaattgggtcaactaggtcacttgttaagggacggagg 1098431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Original strand, 13548408 - 13548467
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacaga 136  Q
    |||||||||||| |||| ||||| | |||| ||||| |||||||||||||||||||||||    
T  13548408 ctcaaaattacgtattgatatgcgtaattgagtcaattgtgtcacttattaagggacaga 13548467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 30351940 - 30351884
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||||||||| | | ||| ||||||||  |||||||||||||||||    
T  30351940 ctcaaaattacgcattggtatacgtaatttggtcaactaggtcacttattaagggac 30351884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 30211610 - 30211564
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcactt 123  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||    
T  30211610 ctcaaaattacgcattggtattcctaattggatcaactgtgtcactt 30211564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 46608409 - 46608471
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  46608409 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 46608471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 48380951 - 48381013
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  48380951 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 48381013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 28914563 - 28914619
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  28914563 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggac 28914619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 39332698 - 39332642
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  39332698 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggac 39332642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 3708448 - 3708510
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||    
T  3708448 ctcaaaattacgcattggtatgcgtaattgggttaactgtgtcacttattaagggacggaggg 3708510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 31152856 - 31152918
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  31152856 ctcaaaattacacattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 31152918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 43447360 - 43447422
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||    
T  43447360 ctcaaaattacgcattggtatgcgtaaatgggtcaactgtgtcacttattaagggacggaggg 43447422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 55631743 - 55631687
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||    
T  55631743 ctcaaaattacgcattggtatacgtaattgggtcaactgtgtcacttattaagggac 55631687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 8525284 - 8525222
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||||||| |||||| |||||    
T  8525284 ctcaaaattacgcattggtatgcgtaattgggtcaaccgtgtcacttattcagggacggaggg 8525222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 10385043 - 10385105
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||  ||||||||||||||||| |||||    
T  10385043 ctcaaaattacgcattggtatgcgtaattgggtcaactaggtcacttattaagggacggaggg 10385105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 40411476 - 40411414
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | | |||||||||||| |||||||||||||||| |||||    
T  40411476 ctcaaaattacgcattggtatgcgtaaatgggtcaactgtatcacttattaagggacggaggg 40411414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 48652667 - 48652729
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||| ||||||||| | | ||||||||||||||||||||||||||||||| |||||    
T  48652667 ctcaaaattacacattggtatccgtaattgggtcaactgtgtcacttattaagggacggaggg 48652729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 39171153 - 39171215
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||| |||||||||||||| | ||| |||||||||| |||||||||||||||| |||||    
T  39171153 ctcaaaatcacgcattggtatgcgtaattaggtcaactgtatcacttattaagggacggaggg 39171215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 43047582 - 43047644
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||| ||||||| | ||||| ||||||   ||||||||||||||||||||||    
T  43047582 ctcaaaattacgcatgggtatgcgtaattggatcaactagatcacttattaagggacagaggg 43047644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 37667642 - 37667591
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaa 128  Q
    ||||||||| |||||||| |||| | ||||||| ||||||||||||||||||    
T  37667642 ctcaaaattgcgcattggcatgcgtaattgggttaactgtgtcacttattaa 37667591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 51306102 - 51306040
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||| ||||||  |||| | || | ||||||||||||| ||||||||||||||||||    
T  51306102 ctcaaaattatgcattgaaatgcgtaatggagtcaactgtgtcatttattaagggacagaggg 51306040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 37164212 - 37164273
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagagg 138  Q
    |||||||||| |||||||||||| | || |||||||||||||||  ||||| ||||| ||||    
T  37164212 ctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatgtattatgggacggagg 37164273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 29821245 - 29821301
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    |||||||||| |||||||||||| | || |||||||||||||||  ||||| |||||    
T  29821245 ctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatgtattatgggac 29821301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 34555346 - 34555408
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  34555346 ctcaaaattacgcattggtatgcataattgggccaactgtgtcacttattaagggacggaggg 34555408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 42098491 - 42098429
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  42098491 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 42098429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 29720590 - 29720646
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  29720590 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggac 29720646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 29455572 - 29455510
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||| |||||    
T  29455572 ctcaaaattacgcattggtatgcgtaaatgggtcaactgtgtcacttattaagggacggaggg 29455510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 900952 - 900891
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagagg 138  Q
    ||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||    
T  900952 ctcaaaattacgcattggtatgcgtaatttggtcaactgtgtcacttattaagggacggagg 900891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 16434721 - 16434665
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||    
T  16434721 ctcaaaattacgcattggtatacgtaattgggtcaactgtgtcacttattaagggac 16434665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 34263568 - 34263506
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||| |||||    
T  34263568 ctcaaaattacgcattggtatgcgtaattggatcaactgtatcacttattaagggacggaggg 34263506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 46866538 - 46866600
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||| |||||    
T  46866538 ctcaaaattacgcattggtatgcgtaattgggtcaattgtatcacttattaagggacggaggg 46866600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 29793242 - 29793186
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    |||||||||| |||||||||||| | ||||||| |||||||||||||||||||||||    
T  29793242 ctcaaaattatgcattggtatgcgtaattgggttaactgtgtcacttattaagggac 29793186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 12948235 - 12948297
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||| |||||||||||| | ||||| ||||||||||||||||||||| ||| |||||    
T  12948235 ctcaaaattatgcattggtatgcgtaattggatcaactgtgtcacttattaagagacggaggg 12948297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 34669803 - 34669865
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||| |||| || ||||| |||||||||||||||||||| |||| |||||    
T  34669803 ctcaaaattacgcattgatatgtataattggatcaactgtgtcacttattaaaggacggaggg 34669865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 50673872 - 50673934
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||| ||||||||||||||| ||||| ||| |||||    
T  50673872 ctcaaaattacgcattggtatgcgtaattggatcaactgtgtcacttgttaagtgacggaggg 50673934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 53274859 - 53274797
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||   |||||||||||||||| |||||    
T  53274859 ctcaaaattacgcattggtatgcgtaattgggtcaactagatcacttattaagggacggaggg 53274797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 9484791 - 9484844
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagg 130  Q
    ||||||||||||||||||||||| | ||||||||||||  ||||||||||||||    
T  9484791 ctcaaaattacgcattggtatgcgtaattgggtcaactaggtcacttattaagg 9484844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 48927666 - 48927611
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaaggga 132  Q
    ||||||||||||||||||||||| | ||||| ||||||  ||||||||||||||||    
T  48927666 ctcaaaattacgcattggtatgcgtaattggatcaactaggtcacttattaaggga 48927611  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 14750924 - 14750862
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | | ||| ||||||||||||  ||||||||||| |||||    
T  14750924 ctcaaaattacgcattggtatgcgtaactggatcaactgtgtcatgtattaagggacggaggg 14750862  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 20144786 - 20144724
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||| ||||||   |||||||||||||||| |||||    
T  20144786 ctcaaaattacgcattggtatgcgtaattggatcaactagatcacttattaagggacggaggg 20144724  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 49076290 - 49076228
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||||||||||||   ||||||||||||| || |||||    
T  49076290 ctcaaaattacgcattggtatgcgtaattgggtcaactagatcacttattaaggaacggaggg 49076228  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 29444916 - 29444855
Alignment:
Q  78 tcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||   | ||| ||||||||||||||||||||||| ||| |||||    
T  29444916 tcaaaattacgcattggtatatgtaatttggtcaactgtgtcacttattaagagacggaggg 29444855  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 12250498 - 12250554
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||||||||||| | ||||||||| ||   ||||||||||||||||    
T  12250498 ctcaaaattacgcattggtatgcgtaattgggtcagctagatcacttattaagggac 12250554  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 38878342 - 38878281
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagagg 138  Q
    ||||||||||||||||| ||| | | ||||| ||||||  ||||||||||||||||| ||||    
T  38878342 ctcaaaattacgcattgatatacgtaattggatcaactaggtcacttattaagggacggagg 38878281  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 38833577 - 38833521
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||||  ||||  | | |||||||||| ||||||||||||||||||    
T  38833577 ctcaaaattacgcattaatatgtgtaaatgggtcaactatgtcacttattaagggac 38833521  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 45299514 - 45299575
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagagg 138  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  45299514 ctcaaaattacgcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggagg 45299575  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 5606264 - 5606202
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |||||    
T  5606264 ctcaaaattaagcattggtatgcgtaattgggtcaactgtgtcacttattaagggacggaggg 5606202  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 7075203 - 7075142
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagagg 138  Q
    ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||    
T  7075203 ctcaaaattacgcattgatatgcgtaattgggtcaactgtgtcacttattaagggacggagg 7075142  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 10100386 - 10100324
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||| |||||    
T  10100386 ctcaaaattacgcattgatatgcgtaattaggtcaactgtgtcacttattaagggacggaggg 10100324  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 10124304 - 10124366
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||| |||||    
T  10124304 ctcaaaattacgcattgatatgcgtaattgagtcaactgtgtcacttattaagggacggaggg 10124366  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 44741538 - 44741600
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||| |||||    
T  44741538 ctcaaaattacgcattgatatgcgtaattggatcaactgtgtcacttattaagggacggaggg 44741600  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 2138902 - 2138840
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||| ||||||||||| | |||||||||||||||| ||||||||| |||| |||||    
T  2138902 ctcaaaattacacattggtatgcgtaattgggtcaactgtgttacttattaaaggacggaggg 2138840  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 8250716 - 8250654
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||| |||||||||| | | ||| ||||||||||||||||||||||||||| |||||    
T  8250716 ctcaaaattatgcattggtatacgtaattaggtcaactgtgtcacttattaagggacggaggg 8250654  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 26544063 - 26544125
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||| ||||| | || ||||||||||||||||||||||| |||| |||||    
T  26544063 ctcaaaattacgcattgatatgcgtaatcgggtcaactgtgtcacttattaaaggacggaggg 26544125  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 52749476 - 52749532
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggac 133  Q
    ||||||||||||||||||||||  | ||||||||||||  |||||||||||||||||    
T  52749476 ctcaaaattacgcattggtatgtgtaattgggtcaactaggtcacttattaagggac 52749532  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 23393427 - 23393489
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||| ||||||| |||| | |||| ||||||||||||| |||||||||||| |||||    
T  23393427 ctcaaaattatgcattggcatgcgtaattgagtcaactgtgtcatttattaagggacggaggg 23393489  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 31651774 - 31651712
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    |||||||||| |||||||||||| | || ||||||||||||||| |||||| ||||| |||||    
T  31651774 ctcaaaattatgcattggtatgcgtaatagggtcaactgtgtcatttattatgggacggaggg 31651712  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 36035884 - 36035942
Alignment:
Q  80 aaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagagg 138  Q
    |||||||| ||||||||||| | ||||||||||||  ||||||||||||||||| ||||    
T  36035884 aaaattacacattggtatgcgtaattgggtcaactaggtcacttattaagggacggagg 36035942  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 5945960 - 5946022
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||| ||||||||   |||||||||||| ||| |||||    
T  5945960 ctcaaaattacgcattggtatgcgtaattaggtcaactagatcacttattaagagacggaggg 5946022  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 6017322 - 6017260
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | ||| | |||||||| | |||||||||| ||| |||||    
T  6017322 ctcaaaattacgcattggtatgcgtaatttgatcaactgtatgacttattaagagacggaggg 6017260  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 1821502 - 1821450
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaag 129  Q
    |||||||||| |||||||||| | | ||||||||||||||||||  |||||||    
T  1821502 ctcaaaattatgcattggtatacgtaattgggtcaactgtgtcatgtattaag 1821450  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 184161 - 184223
Alignment:
Q  77 ctcaaaattacgcattggtatgcatgattgggtcaactgtgtcacttattaagggacagaggg 139  Q
    ||||||||||||||||||||||| | |||||||||||||| ||||||||||| |||| |||||    
T  184161 ctcaaaattacgcattggtatgcgtaattgggtcaactgtatcacttattaaaggacggaggg 184223  T

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