View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17616_low_27 (Length: 217)

Name: NF17616_low_27
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17616_low_27
NF17616_low_27
[»] chr5 (6 HSPs)
chr5 (12-217)||(37525562-37525767)
chr5 (12-217)||(37689999-37690204)
chr5 (12-217)||(37587723-37587928)
chr5 (12-217)||(37618297-37618502)
chr5 (12-217)||(37794065-37794270)
chr5 (12-217)||(37787328-37787533)
[»] chr3 (1 HSPs)
chr3 (12-217)||(14548082-14548290)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 37525562 - 37525767
Alignment:
Q  12 gtgagatgaaacgcattcgggatgaagatggttcacggttcaacaattttcagattctaaaccatcgttacgcccttctaaaccttcttggaaagggagg 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37525562 gtgaaatgaaacgcattcgggatgaagatggttcacggttcaacaattttcagattctaaaccatcgttacgcccttctaaaccttcttggaaagggagg 37525661  T
Q  112 attcagtgaggtgtacaaggtctaaactttactgtacaatattaatcattttatcgtatttatattaatttagcgaatattatacaaggttgagttacta 211  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37525662 attcagcgaggtgtacaaggtctaaactttactgtacaatattaatcattttatcgtatttatattaatttagcgaatattatacaaggttgagttacta 37525761  T
Q  212 aaacca 217  Q
    ||||||    
T  37525762 aaacca 37525767  T

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Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 37689999 - 37690204
Alignment:
Q  12 gtgagatgaaacgcattcgggatgaagatggttcacggttcaacaattttcagattctaaaccatcgttacgcccttctaaaccttcttggaaagggagg 111  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37689999 gtgaaatgaaacgcattcgggatgatgatggttcacggttcaacaattttcagattctaaaccatcgttacgcccttctaaaccttcttggaaagggagg 37690098  T
Q  112 attcagtgaggtgtacaaggtctaaactttactgtacaatattaatcattttatcgtatttatattaatttagcgaatattatacaaggttgagttacta 211  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37690099 attcagcgaggtgtacaaggtctaaactttactgtacaatattaatcattttatcgtatttatattaatttagcgaatattatacaaggttgagttacta 37690198  T
Q  212 aaacca 217  Q
    ||||||    
T  37690199 aaacca 37690204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 37587723 - 37587928
Alignment:
Q  12 gtgagatgaaacgcattcgggatgaagatggttcacggttcaacaattttcagattctaaaccatcgttacgcccttctaaaccttcttggaaagggagg 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  37587723 gtgaaatgaaacgcattcgggatgaagatggttcacggttcaacaattttcagattctaaaccatcgttacgcccttctaaacctttttggaaagtgagg 37587822  T
Q  112 attcagtgaggtgtacaaggtctaaactttactgtacaatattaatcattttatcgtatttatattaatttagcgaatattatacaaggttgagttacta 211  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  37587823 attcagcgaggtgtacaaggtctaaactttactgtacaatattaatcattttatcatatttatattaatttagcgaatattatacatggttgagttacta 37587922  T
Q  212 aaacca 217  Q
    ||||||    
T  37587923 aaacca 37587928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 37618297 - 37618502
Alignment:
Q  12 gtgagatgaaacgcattcgggatgaagatggttcacggttcaacaattttcagattctaaaccatcgttacgcccttctaaaccttcttggaaagggagg 111  Q
    |||| ||||||||||| | ||||||||||| ||||| ||||||||| ||||||||| ||||||||||||| | | | |||||||||||||||||||||||    
T  37618297 gtgaaatgaaacgcatactggatgaagatgcttcacagttcaacaactttcagattttaaaccatcgttatgtcttcctaaaccttcttggaaagggagg 37618396  T
Q  112 attcagtgaggtgtacaaggtctaaactttactgtacaatattaatcattttatcgtatttatattaatttagcgaatattatacaaggttgagttacta 211  Q
     |  || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  37618397 ctatagcgaggtgtacaaggtctaaactttactgttcaatattaatcattttatcgtatttatattaattttgtgaatattatacaaggttgagttacta 37618496  T
Q  212 aaacca 217  Q
    ||||||    
T  37618497 aaacca 37618502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 37794065 - 37794270
Alignment:
Q  12 gtgagatgaaacgcattcgggatgaagatggttcacggttcaacaattttcagattctaaaccatcgttacgcccttctaaaccttcttggaaagggagg 111  Q
    |||| ||||||||||| | || |||||||| ||||| ||||||||| ||||||||| ||||||||||||||| | | |||||||||||||||||||| ||    
T  37794065 gtgaaatgaaacgcatactgggtgaagatgcttcacagttcaacaactttcagattttaaaccatcgttacgtcttcctaaaccttcttggaaagggggg 37794164  T
Q  112 attcagtgaggtgtacaaggtctaaactttactgtacaatattaatcattttatcgtatttatattaatttagcgaatattatacaaggttgagttacta 211  Q
     |  || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  37794165 ctatagcgaggtgtacaaggtctaaactttactgttcaatattaatcattttatcgtatttatattaattttgtgaatattatacaaggttgagttacta 37794264  T
Q  212 aaacca 217  Q
    ||||||    
T  37794265 aaacca 37794270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 37787328 - 37787533
Alignment:
Q  12 gtgagatgaaacgcattcgggatgaagatggttcacggttcaacaattttcagattctaaaccatcgttacgcccttctaaaccttcttggaaagggagg 111  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||    
T  37787328 gtgaaatgaaacgcatacgggatgaagatggttcacggtttaacaattttcagattctaaacaatcgttatgcccttttaaaccttctcggaaagggagg 37787427  T
Q  112 attcagtgaggtgtacaaggtctaaactttactgtacaatattaatcattttatcgtatttatattaatttagcgaatattatacaaggttgagttacta 211  Q
    |||| | |||||||||||||| | |||||||  ||||||||  ||| |||| ||| ||||| ||||| |||| | ||||||||||| |||||||||| ||    
T  37787428 attcggcgaggtgtacaaggtttgaactttagagtacaatagcaattatttgatcatatttgtattactttatcaaatattatacagggttgagttagta 37787527  T
Q  212 aaacca 217  Q
    ||||||    
T  37787528 aaacca 37787533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 14548082 - 14548290
Alignment:
Q  12 gtgagatgaaacgcattcgggatgaagatggttcacggttcaacaattttcagattctaaaccatcgttacgcccttctaaaccttcttggaaagggagg 111  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14548082 gtgaaatgaaacgcattcgggatgaagatggttcacggtttaacaatttttagattctaaaccatcgttacgcccttccaaaccttcttggaaagggagg 14548181  T
Q  112 attcagtgaggtgtacaaggtctaaactttactgtacaatattaatcattttatcgtatttatattaatttagcgaa---tattatacaaggttgagtta 208  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||| |||    
T  14548182 attcagcgaggtgtataaggtctaaactttactgtacaatattaatcattttattgtatttatattaatttagcgaatattattatacaaggttgaatta 14548281  T
Q  209 ctaaaacca 217  Q
    |||||||||    
T  14548282 ctaaaacca 14548290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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