View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17616_low_4 (Length: 395)
Name: NF17616_low_4
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 79 - 385
Target Start/End: Complemental strand, 45139111 - 45138802
Alignment:
| Q |
79 |
ttcaaagaagactttgtgttcactaagaagaatataattatttagtacaatccatcttcaaaatgatagtcgtgtgtggattggaatcgtctccaagcag |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45139111 |
ttcaaagaagactttgtgttcactaagaagaatataattatttagtacaatccatcttcaaaatgatagtcgtgtgtggattggaatcgtctccaagcag |
45139012 |
T |
|
| Q |
179 |
aaatgaatttcatgtatgaaaattctaaatgctactgtatgtggtggtatgtt---ctagttttaaaaaacgaatttgctacagcctacagtgctgcccc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45139011 |
aaatgaatttcatgtatgaaaattctaaatgctactgtatgtggtggtatgttgttctagttttaaaaaacgaatttgctacagcctacagtgctgcccc |
45138912 |
T |
|
| Q |
276 |
ttggaagaggatccaagtctgttatagtatgtgtcaaataccaaggacagaaaatgcatatttaattgaagaaaaactgaatttttattattttgttgga |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45138911 |
ttggaagaggatccaagtctgttatagtatgtgtcaaataccaaggacagaaaatgcatatttaattgaagaaaaactgaatttttattattttgttgga |
45138812 |
T |
|
| Q |
376 |
tcgcattcat |
385 |
Q |
| |
|
|||||||||| |
|
|
| T |
45138811 |
tcgcattcat |
45138802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 45139173 - 45139137
Alignment:
| Q |
18 |
acaaaagttagtatcgtttgccactgtgtttctaacg |
54 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45139173 |
acaaaagttagtatggtttgccactgtgtttctaacg |
45139137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University