View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_low_5 (Length: 391)
Name: NF17616_low_5
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_low_5 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 7141572 - 7141955
Alignment:
| Q |
8 |
gagcacagaactaaccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaat |
107 |
Q |
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| T |
7141572 |
gagcacagaactaaccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaat |
7141671 |
T |
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| Q |
108 |
gatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgt |
207 |
Q |
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| T |
7141672 |
gatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgt |
7141771 |
T |
|
| Q |
208 |
gtccgggtatgacctttggtttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcagga |
307 |
Q |
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| T |
7141772 |
gtccgggtatgacctttggtttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcagga |
7141871 |
T |
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| Q |
308 |
tttggatatgatagaagattttggactaacagttggaaggaaaaatgagttgtgtttgattccaacaatatatgatgtctaact |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
7141872 |
tttggatatgatagaagattttggactaacagttggaaggaaaaatgagttgtgtttgattccaactgtttatgatgtctaact |
7141955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 27 - 370
Target Start/End: Original strand, 7154361 - 7154704
Alignment:
| Q |
27 |
atagatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattc |
126 |
Q |
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|||||||| ||||| |||||||||||||||| ||| | ||||||||||||||| | | ||||||||| ||||||||| ||||||||||| ||| |||| |
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| T |
7154361 |
atagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattc |
7154460 |
T |
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| Q |
127 |
cagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatgacctttgg |
226 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||||||| || |||||||| ||||||||||| || ||| | ||||| |
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| T |
7154461 |
cagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaagaatgtgtccaggcatgtcatttgg |
7154560 |
T |
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| Q |
227 |
tttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcaggatttggatatgatagaagat |
326 |
Q |
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| T |
7154561 |
tatagctagtgttatgcttcctcttgctttattactatatcattttaattgggaactaccaaatcagatgaaacctgaggatttggatatgactgaaaat |
7154660 |
T |
|
| Q |
327 |
tttggactaacagttggaaggaaaaatgagttgtgtttgattcc |
370 |
Q |
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||||| | ||||||||||| |||||||||||||||||||||| |
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| T |
7154661 |
gttggattggcagttggaagggaaaatgagttgtgtttgattcc |
7154704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 370
Target Start/End: Original strand, 7131850 - 7132210
Alignment:
| Q |
10 |
gcacagaactaaccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaatga |
109 |
Q |
| |
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|||| ||| ||||||| || ||||| ||||||||||||||||| |||| |||| | || |||| |||||| || | ||| |||||| ||||||||| ||| |
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| T |
7131850 |
gcactgaattaaccaacattgatggttatgatataccaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactga |
7131949 |
T |
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| Q |
110 |
tgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgt |
209 |
Q |
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|||||||| ||||| ||||||||| ||||| | ||||| |||||||| | ||| ||||| || || || ||||||| ||||| || || ||||| || |
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| T |
7131950 |
tgctgagatgtttaatccagagagatttgaaggtagttctattgattttagagggaataattttgaatatcttccttttggagcaggtagaagaatttgc |
7132049 |
T |
|
| Q |
210 |
ccgggtatgacctttggtttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcaggatt |
309 |
Q |
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|| || || |||||| |||| || |||| ||||| ||||| |||| || ||||| ||||| |||||||| || ||| ||||||| || ||||| |
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| T |
7132050 |
cctggcttgcaatttggtatagctggtattatgcttcctgtggctttattactttatcattttaattgggaacttcctaataagatgaaacctatggatt |
7132149 |
T |
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| Q |
310 |
tggatatgatagaagattttggactaacagttggaaggaaaaatgagttgtgtttgattcc |
370 |
Q |
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| T |
7132150 |
tggatatgactgaacattatggattggctattggaaagaaaagtgatttgtgtttgattcc |
7132210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 41305312 - 41305457
Alignment:
| Q |
69 |
aatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaata |
168 |
Q |
| |
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||||| ||||| || ||||||||||| || |||||| ||| |||||||| |||| || |||||||||| | |||| | |||||||||||||| | |
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| T |
41305312 |
aatgcttgggcgattggaagagatccaaagtattgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacag |
41305411 |
T |
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| Q |
169 |
acttcgagtacattcctttcggagctggaaggagaatgtgtccggg |
214 |
Q |
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|||| || ||||| || || || ||||||||||| ||||||||||| |
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| T |
41305412 |
actttgaatacataccatttggtgctggaaggaggatgtgtccggg |
41305457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 31177755 - 31177694
Alignment:
| Q |
150 |
attgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtcc |
211 |
Q |
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|||||||||||||| | ||||| |||||||| || ||||| |||||||| ||||||||||| |
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| T |
31177755 |
attgatttcaaaggtacaaactttgagtacataccgttcggtgctggaagaagaatgtgtcc |
31177694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 41337787 - 41337875
Alignment:
| Q |
75 |
tgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaagg |
163 |
Q |
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|||||||| ||||||||||| || |||||| ||| |||||||| |||| || |||||||||| | |||| | |||||||||||||| |
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| T |
41337787 |
tgggcaattggaagagatccaaagtattgggttgaagctgagagttttaaacctgagaggtttgttaatagctcaattgatttcaaagg |
41337875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 22986407 - 22986265
Alignment:
| Q |
69 |
aatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaata |
168 |
Q |
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||||| ||||| || ||| | |||||||||||||||||||| | || | |||| ||| ||||||||| |||||||| |||||||||||||||| || |
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| T |
22986407 |
aatgcttgggccattggacgggatcctaaatattggaatgaccccgataagttttatcctgagaggtttattgatagttctattgatttcaaaggaacta |
22986308 |
T |
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| Q |
169 |
acttcgagtacattcctttcggagctggaaggagaatgtgtcc |
211 |
Q |
| |
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| || ||||||||||| || || |||||||||||||| ||||| |
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| T |
22986307 |
attttgagtacattccatttggtgctggaaggagaatttgtcc |
22986265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 229
Target Start/End: Complemental strand, 23610350 - 23610187
Alignment:
| Q |
66 |
ataaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaa |
165 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||||| | || | |||| ||| || |||||| |||||| | ||||||||| ||||| |
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| T |
23610350 |
ataaatgcttgggcaataggaagggatcctaaatattggaatgacccagataagttttatcctgaaaggtttattgatagctctattgatttctcaggaa |
23610251 |
T |
|
| Q |
166 |
ataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatgacctttggttt |
229 |
Q |
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||| || |||| |||||| || || ||||| |||||||| ||||| || |||| || |||||| |
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| T |
23610250 |
ctaattttgagttcattccatttggtgctggtaggagaatttgtcccggcatgaactatggttt |
23610187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 12425353 - 12425274
Alignment:
| Q |
67 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagt |
146 |
Q |
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|||||||||||||||| ||||||||||| || ||||| ||||||||||| |||||| || ||||||||| |||||||| |
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| T |
12425353 |
taaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagt |
12425274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 12268332 - 12268409
Alignment:
| Q |
67 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgata |
144 |
Q |
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|||||||||||||||| ||||||||||| || ||||| |||||| |||| |||||| || ||||||||| |||||| |
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| T |
12268332 |
taaatgcatgggcaattggaagagatcccaatcattggtctgatgcagagaagtttatacctgagaggtttcatgata |
12268409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 146
Target Start/End: Complemental strand, 55955026 - 55954947
Alignment:
| Q |
67 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagt |
146 |
Q |
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|||||||||||||||| ||||||||||| ||| ||||| ||||||| ||| |||||| || || |||||| |||||||| |
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| T |
55955026 |
taaatgcatgggcaattggaagagatcccaaacattggtatgatgcaaagaagtttatacctgaaaggtttaatgatagt |
55954947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 41795792 - 41795747
Alignment:
| Q |
67 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgc |
112 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
41795792 |
taaatgcatgggcaatcggaagagatcccaaatattgatatgatgc |
41795747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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