View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_low_6 (Length: 382)
Name: NF17616_low_6
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 44184656 - 44184304
Alignment:
| Q |
13 |
aatataactgtgttagcaggacactatgccaaatggtcaaaagaacttgcttggttactgctattaaataatctgtttggtttctgtcatagcagctaac |
112 |
Q |
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| T |
44184656 |
aatataactgtgttagcaggacactatgccaaatggtcaaaagaacttgcttggttactgctattaaataatctgtttggtttctgtcatagcagctaac |
44184557 |
T |
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| Q |
113 |
taagaaactttcttatttggaagtcaagattttaatattggtctttttaatgtaaacattggtatgtggatgtcaatttaacactagagaccgtttcaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44184556 |
taagaaactttcttatttggaagtcaagattttaatattggtctttttaatgtaaacattggtatgtggatgtcaatttaacactagagaccgtttcaga |
44184457 |
T |
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| Q |
213 |
ctttcttcctataaagggggcaactaaatgatatttatttaggggattggtaaggatttatgtcaaaacttgtttcaggaacttgatttatttttcttta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44184456 |
ctttcttcctataaagggggcaactaaatgatatttatttaggggattggtaaggatttatgtcaaaacttgtttcaggaacttgatttatttttcttta |
44184357 |
T |
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| Q |
313 |
atgatttgtgacatatatgctttaaagaaaaatatattcacacttgtcaaacc |
365 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44184356 |
atgatttgtgacatatatgctttaaagaaaaatatcatcacacttgtcaaacc |
44184304 |
T |
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