View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_low_7 (Length: 362)
Name: NF17616_low_7
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 1509014 - 1509223
Alignment:
| Q |
19 |
atgtgcctcttagcaaattcaaggggaaggttcttttgattgttaggccttgtttggtaggcgagaaacaccgacatgcgagagaaattgaagagaaaca |
118 |
Q |
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| T |
1509014 |
atgtgcctcttagcaaattcaaggggaaggttcttttgattgttaggccttgtttggtaggcgagaaacaccgacatgcgagagaaattgaagagaaaca |
1509113 |
T |
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| Q |
119 |
ggcaacttctcttgtttggaacatcaatgaaattgtgaagagagaataaaatactgtggagcccatacctttttgagttctctccaaattgagaaggaag |
218 |
Q |
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| T |
1509114 |
ggcaacttctcttgtttggaacatcaatgaaattgtgaagagagaataaaatactgtggagcccatacctttttgagttctctccaaattgagaaggaag |
1509213 |
T |
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| Q |
219 |
tgggtggaga |
228 |
Q |
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|||||||||| |
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| T |
1509214 |
tgggtggaga |
1509223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 1509287 - 1509324
Alignment:
| Q |
292 |
ccaaaccacccatcaaatctactatatttctcgcataa |
329 |
Q |
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| T |
1509287 |
ccaaaccacccatcaaatctactatatttctcgcataa |
1509324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 91 - 228
Target Start/End: Complemental strand, 48670117 - 48669980
Alignment:
| Q |
91 |
gacatgcgagagaaattgaagagaaacaggcaacttctcttgtttggaacatcaatgaaattgtgaagagagaataaaatactgtggagcccataccttt |
190 |
Q |
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| T |
48670117 |
gacatgcgagagaaattgaagagaaacaaacaacttctcttgtttggaacatcaatgaaactgtgaagagagaataaaataatgtgggacccacaccttt |
48670018 |
T |
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| Q |
191 |
ttgagttctctccaaattgagaaggaagtgggtggaga |
228 |
Q |
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| T |
48670017 |
ttgagttctctccaaattgagaggaaagtgggtggaga |
48669980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 3069606 - 3069562
Alignment:
| Q |
19 |
atgtgcctcttagcaaattcaaggggaaggttcttttgattgtta |
63 |
Q |
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| T |
3069606 |
atgtgcctcttagcaaattcaaggggaaggttcttttgattgtta |
3069562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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