View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17616_low_9 (Length: 350)
Name: NF17616_low_9
Description: NF17616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17616_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 27376262 - 27375931
Alignment:
| Q |
1 |
ttaaggtcctattaccctaagtatctttgattataactcactttgtccttctatggcagttgtagagagattggagcaagtggcaatctgagatccatca |
100 |
Q |
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| T |
27376262 |
ttaaggtcctattaccctaagtatctttgattataactcactttgtccttctatggcagttgtagagagattggagcaagtggcaatctgagatccatca |
27376163 |
T |
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| Q |
101 |
agtataggaataagtgaatggactaaggaaatcaaggctgtatcgttgaaagatgctatttcttggagtccagtccaatttttactgttgaactatcata |
200 |
Q |
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| T |
27376162 |
agtataggaataagtgaatggactaaggaaatcaaggctgtatcgttgaaagatgctatttcttggagtcctgtccaatttttactgttgaactatc--a |
27376065 |
T |
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| Q |
201 |
gagtaagattgcaagttaaacgatagtgaaaatttatttgatgaagaattcttccacagtttaattgattattgatttccaatcaaagatggaaactatt |
300 |
Q |
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| T |
27376064 |
gagtaagattgcaagttaaacgacagtgaaaatttatttgatgaagaattcttccacagtttaattgattattgatttccaatcaaagatggaaactatt |
27375965 |
T |
|
| Q |
301 |
cattttcaatatattttttcatgttcattgattt |
334 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
27375964 |
cattttcaatatattttttcttgttcattgattt |
27375931 |
T |
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