View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_high_13 (Length: 309)
Name: NF17617_high_13
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 28634534 - 28634223
Alignment:
| Q |
1 |
tgtttttaagaatcaacatggcgttgagagagttgacaacatgactcttctctataaaaagaatttgtgttcaatctttagagttgctcagaagatctcg |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
28634534 |
tgtttttaagaatcaacatggtgttgagagagttgacaacatgactcttctctacaaaaagaatttgtgttcaatctttagagtcgctctgaagatctcg |
28634435 |
T |
|
| Q |
101 |
ctaccaacttgaggtttaatctcatagtgaccgtgagataccttgaaacacaaaggatcataga--ttcagatacatgagagcaaaacgaataaaatata |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
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| T |
28634434 |
ctaccaacttgaggtttaatctcatagtgaccgtgagataccttaaaacacaaaggatcatagatctacatatacatgagagcaaaacgaataaaatata |
28634335 |
T |
|
| Q |
199 |
tgaagaaatatagaaatgtttttgaattgataatgtcctttgg--------actatatatacttagtgtagtatagtacgatagtatacttttttattaa |
290 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28634334 |
tgaa-aaatatagaaatgtttttgaattgataatgtcctttggactataatactatatatacttagtgtagtatagtacgatagtattcttttttattaa |
28634236 |
T |
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| Q |
291 |
attgatgatgtcc |
303 |
Q |
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||||||||||||| |
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| T |
28634235 |
attgatgatgtcc |
28634223 |
T |
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