View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17617_high_14 (Length: 308)
Name: NF17617_high_14
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 6887741 - 6887462
Alignment:
| Q |
17 |
aaattttatgttaattaacattatttttgttacnnnnnnnntgttaattaacattctgttacaagtttccgaatatccctcgttcctagaccctgaaaga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6887741 |
aaattttatgttaattaacattatttttgtta-aaaaaaaatgttaattaacattctgttgcatgtttccgaatatccctcgttcctagaccctgaaaga |
6887643 |
T |
|
| Q |
117 |
gagaagtaacaatagtagggagaataagaaagaggatgtctgcttcacgagatctggagcttctcattccagtgtcaaaaattcctgaaaatggaggctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6887642 |
gagaagtaacaatagtagggagaataagaaagaggatgtctgcttcacgagatctggagcttctcattccagtgtcaaaaattcctgaaaatggaggctc |
6887543 |
T |
|
| Q |
217 |
taaatcatcatcaacttcttcgtcaccgggtggaatggttctctccacccaacatcactccggccaggaggtaatgttcat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6887542 |
taaatcatcatcaacttcttcgtcaccgggtggaatggttctctccacccaacatcactccggccaggaggtaacgttcat |
6887462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University