View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_high_19 (Length: 239)
Name: NF17617_high_19
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28635494 - 28635269
Alignment:
| Q |
1 |
tcatcccaaaacttctcactgatttctgctccgatagcacaccacgcaccgtggttaaaagcagggatgcatcacatgactgcatacatatgcatcatta |
100 |
Q |
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| T |
28635494 |
tcatcccaaaacttctcaccgatgtctgctccgataccacaccatgcaccgttgctaaaagcagggatgcatcacatgactgcatacatatacatcatta |
28635395 |
T |
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| Q |
101 |
ttagttgccgattaattt-aaacgatataactttgttgtgttaattatgtaatctatgtatatttatactcacattaactacgcaatcatggaagagatt |
199 |
Q |
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| T |
28635394 |
ttagttgccgattaatttgaaacgatataactttgttgtgttaattatgttatctatatatatttatactcacgttgactgtgcaatcatggaagagatt |
28635295 |
T |
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| Q |
200 |
tcgaacccatgatatggctgtgtttc |
225 |
Q |
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| T |
28635294 |
tcgaacccaggaaatggctgtgtttc |
28635269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 28604958 - 28604891
Alignment:
| Q |
158 |
tatatttatactcacattaactacgcaatcatggaagagatttcgaacccatgatatggctgtgtttc |
225 |
Q |
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| T |
28604958 |
tatatttatactcaccttgactatgcaatcatggaagagatttctaacccacgaaattgctgtgtttc |
28604891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 28654775 - 28654685
Alignment:
| Q |
1 |
tcatcccaaaacttctcactgatttctgctccgatagcacaccacgcaccgtggttaaaagcagggatgcatcacatgactgcatacatat |
91 |
Q |
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| T |
28654775 |
tcatcccaaaacttcttaccgatgtctgctccgataccacaccgcgccacgttgctaaaagaaaggatgcatcgcatgactgcatatatat |
28654685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 28605326 - 28605243
Alignment:
| Q |
1 |
tcatcccaaaacttctcactgatttctgctccgatagcacaccacgcaccgtggttaaaagcagggatgcatcacatgactgca |
84 |
Q |
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| T |
28605326 |
tcatcccaaaacttctctccgctgtctgctccgataccacgccgtgcaccgtctccaaaagcagggatgcatcacatgactgca |
28605243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 28663026 - 28662959
Alignment:
| Q |
158 |
tatatttatactcacattaactacgcaatcatggaagagatttcgaacccatgatatggctgtgtttc |
225 |
Q |
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| T |
28663026 |
tatatttatactcacctcgactatgcaatcatggaagagatttctaacccacgaaaccgctgtgtttc |
28662959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 28654620 - 28654566
Alignment:
| Q |
167 |
actcacattaactacgcaatcatggaagagatttcgaacccatgatatggctgtg |
221 |
Q |
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| T |
28654620 |
actcacattgaccatgcaatcatggaagagatttcgaagccacgaaatggctgtg |
28654566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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