View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17617_high_2 (Length: 746)
Name: NF17617_high_2
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 91 - 730
Target Start/End: Complemental strand, 37616267 - 37615632
Alignment:
| Q |
91 |
atagcattcctttatttcatccatactatttggatcctgtgaatatctgcttttatctccctataactttctatgatagactcaaaagttaagatttgtt |
190 |
Q |
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| T |
37616267 |
atagcattcctttatttcatccatactatttggatcctgtgaatatctgcttttatctccctataactttctatgatagactcaaaagttaagatttgtt |
37616168 |
T |
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| Q |
191 |
gaatcacatgttctccatttacattattgttttaattttgttttttgtggatcggtagacctggcttgcataataatttgtcttacttctataccatggt |
290 |
Q |
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| T |
37616167 |
gaatcacatgttctccatttacattatttttttaattttgttttttgtggatcggtagacctggcttgcataataatttgtcttacttctataacatggt |
37616068 |
T |
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| Q |
291 |
ggaaactggaaatcatgtatttcctaggcttgttacgatatctgtaactttttatttatctcctcttgactctccaatcaagtttatcttatacattgat |
390 |
Q |
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| T |
37616067 |
ggaaa-------tcatgtatttcctaggcttgttaccatatctctaactttttatttatctcctcttgactctccaatcaagtttatcttatagattgat |
37615975 |
T |
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| Q |
391 |
caaaagagtagtttgaaagcatctttgtctatcttgtcaacgtgatgcacaatatttgaaaatgagtctgtcaatgaaattgccataccacacacaacta |
490 |
Q |
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| T |
37615974 |
caaaagagtagttcgaaagtatctttgtctatcttgtcaacgtgatgcacaatatttgaaaatgagtctgtcaatgaaattgccataccacacacaacta |
37615875 |
T |
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| Q |
491 |
ctagttttctagcatttactcatgttagggacattttattaatgatattgttgagcaatacttaatgttgacatgatga---caagcaatgttttgaata |
587 |
Q |
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| T |
37615874 |
ctagttttctagcatttactcatgttagggacattttattaatgatattgttgagcaatacttaatgttgacatgatgacgtcaagcaatgttttgaata |
37615775 |
T |
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| Q |
588 |
gtattttgcttcacatttgtggctagaatgttaaggcttacgaggccttaacaactacttttgttactgtaaaagtacagatcgagtaaattgatatatc |
687 |
Q |
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| T |
37615774 |
gtattttgcttcacatttgtggctagaatgttaaggcttacgaggccttaacaactacttttgttactgtaaaagtacagatcgagtaaattgatatatc |
37615675 |
T |
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| Q |
688 |
cttgcctttcaaatttactaaactatgatgtagtattgtctct |
730 |
Q |
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| T |
37615674 |
cttgcctttcaaatttactaaactatgatgtagtattgtctct |
37615632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 37616394 - 37616319
Alignment:
| Q |
14 |
tactcaatatttaatgtacgtttcgtatcacggtgagtatatcagaatcaccgcgatccattgtgattttgcaaaa |
89 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
37616394 |
tacttaatatttaatgtacgtttaatatcacggtgagtatatcagaatcaccgcgatccatcgtaattttgcaaaa |
37616319 |
T |
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