View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17617_high_20 (Length: 237)
Name: NF17617_high_20
Description: NF17617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17617_high_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 18361761 - 18361983
Alignment:
| Q |
1 |
ctatacataactttcagacatttccacctcaaaacaaatttggagtacagagttcaatttaagcaatcaatcatagaacagatgcttgaaggatggacgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18361761 |
ctatacataactttcagacatttccacctcaaaacaaatttggagtacagagttcaatttaagcaatcaatcatagaacagatgcttgaaggatggacgc |
18361860 |
T |
|
| Q |
101 |
ttcctcaagtaagtaacaactgtcaagaacacttgaatttcaagactccagtcaatttttattttagattttattagaaatgatgtaaatgtctaacgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18361861 |
ttcctcaagtaagtaacaactgtccagaacacttgaatttcaagactccagtcaatttttattttagattttattagaaatgatgtaaatgtctaacgtt |
18361960 |
T |
|
| Q |
201 |
tgtaacttaagagaccaaaatgg |
223 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
18361961 |
tgtaacttacgagaccaaaatgg |
18361983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3017932 - 3018153
Alignment:
| Q |
1 |
ctatacataactttcagacatttccacctcaaaacaaatttggagtacagagttcaatttaagcaatcaatcatagaacagatgcttgaaggatggacgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3017932 |
ctatacataactttcagacatttccacctcaaaacaaatttggagtacagagttcaatt-aagaaatcaatcatagaacagatgcttgaaggatggacgc |
3018030 |
T |
|
| Q |
101 |
ttcctcaagtaagtaacaactgtcaagaacacttgaatttcaagactccagtcaatttttattttagattttattagaaatgatgtaaatgtctaacgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3018031 |
ttcctcaagtaagtaacaactgtccagaacacttgaatttcaagactccagtcaatttttattttagattttattagaaatgatgtaaatgtctaacgtt |
3018130 |
T |
|
| Q |
201 |
tgtaacttaagagaccaaaatgg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3018131 |
tgtaacttaagagaccaaaatgg |
3018153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University